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Detailed information on CNT30107802


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Oryza longistaminataOryza sativa49.126.2795.37410forward
CNT30520678Oryza longistaminataSetaria italica15.0921.3995.24126forward
CNT30554955Oryza longistaminataOryza glaberrima85.7573.0693.44716forward
CNT30440289Oryza longistaminataAegilops tauschii14.1323.3791.53118forward
CNT30368632Oryza longistaminataSorghum bicolor10.4224.2385.0687forward
CNT30371073Oryza longistaminataOryza glumipatula85.0372.3893.8710forward
CNT30150787Oryza longistaminataBrachypodium distachyon11.7426.7892.8698forward
CNT30103362Oryza longistaminataOryza rufipogon84.6763.0794.34707forward
CNT30117581Oryza longistaminataOryza nivara85.0344.7793.8710forward
CNT30604553Oryza longistaminataOryza punctata28.7416.0295.83240forward

Expression of CNT30107802

Peptides detected in this lncRNA

>peptide 1 (36 aa)
VFFFFVEEVIHITSSYNTLIILQRRNNNATTTVYNL*

Sequence

>CNT30107802
GTTTTTTTTTTTTTTGTAGAAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAAGACGTAATAATAATGCTACTACTACTGTTT
ACAACCTGTAAGATCAGCAGTAGAAGGTAAATAGTACAAGAGCAATGGACGCGACGGCCGGAGTCACTGACCAGTGACCGGCCACCGGAGACGCACGCCG
GACACAAAAACGCCGGCTGCCGGTATCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACCCTAGCATCTACAGAGGAAACAAGTCCGGAGAGAGAG
AGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTTAAAAACTGCTAATCCATGCCCGTCCGTGCGGTGCAGAATGTCTAAAATCCC
ATCTGCACGGCGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGTTAATTGGCGGCGAGGAGGGAGTCCCAGT
CGATCTCGTAGGAGGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTGCTGCATCTCCGGCACGGTCGCGGG
CGTCTCGGCCGTGGTGGCGGCGGAGGAGGACGGCGACAGGGACGGCGACGAGTCGGCGGACTCCAGGCAGGACGACGCGGCGGCGGAGGACGGCGACGAG
CAGTTGCTGGTGGTGGCGGTGGCGGTGGCGGTGGACTTCTTGGCGTTCTTGGCGGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGG
CGTGGAGCGGGCCGCGGGAGGCGGCGGTGGCGGGG