Detailed information on CNT30368632


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Sorghum bicolorOryza sativa24.235.5786.2187forward
CNT30673611Sorghum bicolorSetaria viridis37.3357.5186.57134forward
CNT30552872Sorghum bicolorOryza glaberrima25.639.2585.8792forward
CNT30347347Sorghum bicolorEragrostis tef31.7520.3990.35114forward
CNT30371073Sorghum bicolorOryza glumipatula24.238.8786.2187forward
CNT30107802Sorghum bicolorOryza longistaminata24.2310.4285.0687forward
CNT30100504Sorghum bicolorOryza rufipogon25.6312.0985.8792forward
CNT30575459Sorghum bicolorOryza barthii25.6313.2985.8792forward
CNT30583267Sorghum bicolorEchinochloa crusgalli33.157.4191.6119forward
CNT30117581Sorghum bicolorOryza nivara24.235.4986.2187forward
CNT30603705Sorghum bicolorOryza punctata25.639.9483.792forward

Expression of CNT30368632

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DELKPCPLRPTNSLNPTRSRYGRCLIFHRIRSGHG*

>peptide 2 (52 aa)
MESQSISQDGYLLRCRAADSSHGASVKSRLTISGCCCCGGGGGGSWEKEVAAV

Sequence

>CNT30368632
GATGAGCTTAAACCCTGTCCTCTACGTCCGACGAACTCCTTAAACCCTACTCGTAGTCGCTACGGCCGATGTCTAATATTCCATCGGATCCGGAGCGGCC
ACGGTTAATTAATTAAATCCATTGACAAAAATTACAGCGCGCGTGATTGAGCATCTGCTTGTTGTTGTTGTTGTTGGGTTCATCTTGATCACGAGAGGAT
GGAGTCCCAGTCGATCTCCCAGGACGGATACTTGTTGAGGTGCAGGGCGGCGGACTCGTCCCACGGCGCCTCCGTGAAGTCCAGGCTTACCATCTCGGGA
TGCTGCTGCTGCGGCGGCGGCGGTGGCGGGAGCTGGGAGAAGGAGGTGGCGGCGGTGGG