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Detailed information on CNT30604553


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Oryza punctataOryza sativa30.6429.490.63459forward
CNT30520678Oryza punctataSetaria italica8.4121.3994.44126forward
CNT30554858Oryza punctataOryza glaberrima54.5480.4186.29817forward
CNT30440289Oryza punctataAegilops tauschii7.8823.3790.68118forward
CNT30347505Oryza punctataEragrostis tef17.0929.886.72256forward
CNT30371073Oryza punctataOryza glumipatula53.9482.3686.63808forward
CNT30107802Oryza punctataOryza longistaminata51.0791.6285.75765forward
CNT30150787Oryza punctataBrachypodium distachyon6.5426.7890.8298forward
CNT30103362Oryza punctataOryza rufipogon53.9472.0887.5808forward
CNT30577660Oryza punctataOryza barthii27.9788.487.59419forward
CNT30117581Oryza punctataOryza nivara52.8749.9487.12792forward

Expression of CNT30604553

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDANSRLRPESLTSDRPATGDARRTQKRRLLVTSASPGRKNTNQP*

Sequence

>CNT30604553
TTTAACAACGACGCTAAATAATAGTAATAATAGTAGAGGTAATTCACATTACAAGTTCATAACACGCTAATAATATTACAAGGACATAAATAATGCTACT
ACTACTGTTTACAACCTGTAAGATCAGCAGTAGAGGTAAATAGTACAGACGAAAGAGCAATGGACGCGAACTCGCGACTACGGCCGGAGTCACTGACCAG
TGACCGGCCGGCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCTGGTAACATCGGCTTCTCCGGGGAGGAAGAACACCAACCAACCCTAGCAT
CTACAAATTACAGAACCAAAGTCTGGAGAGAGATCTACGTACACAACGAACCAACCAAAAGGATTAGGGACTTAAAACTGCTAATCCACTAGTGCATGTC
CGTCCGATGGTGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGCGGTGGTGGTGGTGGT
GGCGGTGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCAGCGACCTCGTCCCACGGCGCCTCGCT
GAAGTCGAGCTGCTGCATCTCCGGCACGGTCGCGGGCGTCTCGGCCGTGGTGGCGGCGGAAGACGGCGACAGGGACGGCGACGAGTCGGCGGACTCCAGG
CAGGACGACGCGTCGTCGGAGGACGGCGAGGAGCAGTTGCTGGTGGGCGCGGAGGAGGTTGCGGTGGCGGAGGCGGAGGTGGAGGCGGGCCTGGATGTAG
TGGATCTGGGCCGGGCTGAACTCCGGCTGGGCCGGCCCGCCACCGTACGCGAACGCCGCCGCGTGCGGGAAGGAGAATGGCGAGGTGGGACTAAACTGGG
AACAAACCGGAGGCGAGCCGGAGGCATCTCGGATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCTGACAGATCTATAGCTGCAGCCATCTACTCTAA
TCACAACAACTCAACAAACCTTTTTTTTGGATTTTTTTTCTGATAGTACTAAGCAAGAACAAAGATTGCCTGGTTCCGAATCGAAAATCAAGAACAGGCA
GGAGAAATCAACAGCCACAGTAAAAACAGATGGCTTTTGGTGGTAGATCTAGCAAGTGAGGTGTGGAAAAAGAACCCCTCTTGGCTACCAACCTACACTA
GAACACAAAGAAGAAGAAGAAACCAGCAGATCTGGGAGCCCTGGATCTAAAAGGCCCAGGGCCTCGCACACTCTGCAACCTAACCAAGAAACAGTGGAAG
AACAGATGGGAGACCTAGAGGAAGAAGAAGAGGGTTTCGAGAAAACTTTACCTTGAAGACGCTCGAAGTCGCTCAGATCTAAAGCTTTACCTCGCTCGAG
CTCACGAAGGCTGTGGTGTTTGTGGGCTTGGTAGTGGTGGCGGCGGCGGTGGAGGATGGCTGTGGATCTGGGTGTGTGGGCGAAAGTGGGAATGGTGG