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Detailed information on CNT30475502


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30368761Saccharum spontaneumSorghum bicolor9733.2897.23614forward

Expression of CNT30475502

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSPAAIQTFLCILPRMWQRRRVPSTQMASHRPLPSIRVTCAYSCPSSLKTSSRLSPTRPRPR

>peptide 2 (66 aa)
MYQIKNEIIRDYLTTPIQLQDHAGRIVIHAGRIANPQQPAKPKPYHHILEQKSHNNKVARKEKQIS*

Sequence

>CNT30475502
TCCAGAACAATAATAACTTAGTATAGAACATCTTGTGACAGCATGTACCAGATTAAAAACGAAATTATCCGCGATTATTTAACCACCCCAATCCAATTAC
AAGATCACGCAGGCAGGATTGTGATCCACGCAGGCAGGATTGCGAATCCACAACAGCCAGCCAAGCCTAAACCATACCACCACATACTAGAACAGAAATC
ACACAATAATAAAGTAGCCCGCAAGGAGAAACAGATTTCTTAGATCTTGTCGATGTCCTCGTCCTCGAACTGGATGTAGTCGCTGCCCTCCTCGCCGTCC
TCGGGCCCATCGACGTCGACGCCCTCGTTGAGCCTGAGCGTCTCGGGGAGCTCCCCGTAGGCCTTGAGCAGGCGCGCCTCGTCGTTCATGTACTTGAGGA
TGACGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGACGATGTCCCCGGCCGCGATCCAGACCTTCTTGTGCATCTTGCCCCGGATGTGGCA
GAGGCGGCGCGTGCCATCGACGCAGATGGCCTCGCACCGCCCGTTGCCGAGCATCCGGGTCACCTGCGCGTACTCCTGCCCGTCTTCCTTGAAGACGAGC
TCGCGCTTGTCGCCAACGCGTCCTCGTCCTCGT