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Detailed information on CNT30625732


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40034|EF1A2_HORVU, E-value = 5e-28

BLAST vs NONCODE:
NONCQUT004692, E-value = 2e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Daucus carotaSetaria viridis64.9538.8387.77139forward
CNT30520930Daucus carotaSetaria italica89.7270.3384.9192forward
CNT30546688Daucus carotaIpomoea triloba64.4932.0988.41138forward
CNT30378189Daucus carotaArabidopsis thaliana63.0832.6992.59135forward
CNT30727589Daucus carotaCorchorus capsularis62.6239.4188.81134forward
CNT30195181Daucus carotaPisum sativum63.0828.4891.85135forward
CNT30709121Daucus carotaGlycine max60.2832.1784.5129forward
CNT30160107Daucus carotaPistacia vera64.9531.187.77139forward
CNT3093993Daucus carotaSolanum tuberosum62.6225.6785.82134forward
CNT30288144Daucus carotaTriticum aestivum42.0624.3287.7890forward
CNT30224421Daucus carotaHordeum vulgare63.5552.3187.5136forward
CNT30386294Daucus carotaTriticum turgidum41.1223.9187.588forward
CNT30562819Daucus carotaActinidia chinensis37.8516.0790.1281forward
CNT30590647Daucus carotaMusa acuminata29.9120.5189.0664forward
CNT30509848Daucus carotaSolanum lycopersicum63.0858.786.67135forward
CNT30658093Daucus carotaTriticum dicoccoides5024.4986.92107forward
CNT30450104Daucus carotaSaccharum spontaneum20.5610.5593.1844forward
CNT30608684Daucus carotaGossypium raimondii61.2131.1288.55131forward
CNT30218533Daucus carotaKalanchoe fedtschenkoi34.5814.2391.8974forward
CNT3067093Daucus carotaLeersia perrieri21.9610.5193.6247forward
CNT30646927Daucus carotaRosa chinensis30.8419.6493.9466forward
CNT30689637Daucus carotaTriticum urartu64.9514.2488.49139forward
CNT30721628Daucus carotaTriticum spelta47.6630.8286.27102forward
CNT30338600Daucus carotaEragrostis tef63.0828.1285.19135forward
CNT30480842Daucus carotaArabidopsis halleri30.8413.5590.9166forward
CNT30368333Daucus carotaSorghum bicolor92.5273.6187.37198forward
CNT30570869Daucus carotaVitis vinifera63.5540.8487.5136forward
CNT30704438Daucus carotaPrunus avium86.4576.7687.57185forward
CNT30644460Daucus carotaCannabis sativa60.2843.1489.92129forward
CNT30323623Daucus carotaAsparagus officinalis48.633.3384.62104forward
CNT30120974Daucus carotaCitrus clementina64.9522.9490.65139forward
CNT30101083Daucus carotaOryza rufipogon64.9526.0385.61139forward
CNT30116334Daucus carotaOryza nivara64.9522.7986.33139forward
CNT30594407Daucus carotaEragrostis curvula64.9548.9487.05139forward
CNT30726347Daucus carotaLupinus angustifolius64.9529.1491.37139forward

Expression of CNT30625732

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LGDTSFKTSGGGVNNEDSTISLRSSSNHVLNEITMSWSINDCAVVLDKMTSGGRLSRVDMANDHNTDMNLF

Sequence

>CNT30625732
CTTGGAGATACCAGCTTCAAAACCTCCGGTGGTGGAGTCAATAATGAGGACAGCACAATCAGCCTGAGAAGTTCCAGTAATCATGTTCTTAATGAAATCA
CGATGTCCTGGAGCATCAATGACTGTGCAGTAGTACTTGATAAGATGACCAGTGGTGGTAGACTTTCCAGAGTCGACATGGCCAATGACCACAATACTGA
TATGAATCTTTTCC