Detailed information on CNT30674723


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 2e-65

BLAST vs NONCODE:
NONBNAT004015, E-value = 7e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30486254Setaria viridisOlea europaea2148.389.19185forward
CNT30442409Setaria viridisAegilops tauschii41.5454.6386.89366forward
CNT30313575Setaria viridisCamelina sativa20.8978.9779.35184forward
CNT3059902Setaria viridisArabidopsis lyrata19.7575.3281.03174forward
CNT3078381Setaria viridisBrassica juncea21.7971.9185.42192forward
CNT305432Setaria viridisZea mays21.4551.591.01189forward
CNT30364046Setaria viridisSorghum bicolor24.7437.4695.41218forward
CNT30595966Setaria viridisOryza meridionalis26.7938.588.14236forward
CNT3033661Setaria viridisTheobroma cacao23.72100.4885.17209forward

Expression of CNT30674723

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MHSSAFSTNWWTERVALYGSTTVSDTFGEGKTENVSIMRSGYSSLIFEINSVPIPDPVPPPREWHTWNP

>peptide 2 (79 aa)
MVTDLTCRRGSSPLPRPRTHPPRPRSRPGTAGIPTRGRSCCSRPQWTPWTGPLAGCHTHWTSRCWGSTPRSRTSSCSGR*

>peptide 3 (53 aa)
LYKYQRGRLKFNRNLINAEHTNSISNTVPKARLHSIRKIQASTATDSGRTVVR*

>peptide 4 (43 aa)
MFLASHICCVSSGTVRARYCWEPREGLIVKNHALISILNQLVD*

>peptide 5 (84 aa)
MARVSSAHHVLGIPHLLCELRDSEGTVLLGATGGPHCQEPCTHQHSQPTGGLKEWHCMAQPRYQILSVRGKLRMSASCGQGTPP*

>peptide 6 (95 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSSGFISSSSSSYSPSSSAVASWYCWYSDTRSFMLLSASVDAMDRPLGGMSHTLDFTLLGIHSTK*

Sequence

>CNT30674723
CTATATAAGTATCAACGCGGAAGACTCAAATTCAACAGAAACCTCATAAACGCGGAGCATACTAACAGCATAAGTAATACAGTACCAAAAGCAAGACTCC
ATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACGGTGGTACGCTAGCAGTAGTAACATGGCAACAAAACACGTAAGGAACAACC
CATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGTCACAGATCTCACATGTCGTCGGGGTTCATCTCCTCTTCCTCGTCCTCGTA
CTCACCCTCCTCGTCCGCGGTCGCGTCCTGGTACTGCTGGTATTCCGACACGAGGTCGTTCATGTTGCTCTCGGCCTCAGTGGACGCCATGGACAGGCCC
CTTGGCGGGATGTCACACACACTGGACTTCACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCA
CCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAGAGGCAGTGAGGTAACGCCCATGGCGAGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACAT
CTGCTGTGTGAGCTCAGGGACAGTGAGGGCACGGTACTGCTGGGAGCCACGGGAGGGCCTCATTGTCAAGAACCATGCACTCATCAGCATTCTCAACCAA
CTGGTGGACTGAAAGAGTGGCATTGTATGGCTCAACCACGGTATCAGATACTTTCGGTGAGGGGAAAACTGAGAATGTCAGCATCATGCGGTCAGGGTAC
TCCTCCCTGATCTTTGAGATCAACAGCGTACCCATACCAGATCCAGTACCACCACCAAGAGAGTGGCATACTTGGAATCCT