« Back to Saccharum spontaneum search


Detailed information on CNT30445850


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 1e-142

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Saccharum spontaneumOryza sativa34.444.8489.46313forward
CNT30677760Saccharum spontaneumSetaria viridis53.353.4792.99485forward
CNT30522101Saccharum spontaneumSetaria italica63.5254.5392.39578forward
CNT30640127Saccharum spontaneumNymphaea colorata30.2234.4685.09275forward
CNT30702815Saccharum spontaneumQuercus lobata18.1344.8486.06165forward
CNT30712730Saccharum spontaneumGlycine max43.9678.1284.5400forward
CNT30295550Saccharum spontaneumTriticum aestivum57.875.6889.73526forward
CNT30144939Saccharum spontaneumMedicago truncatula24.1845.1784.09220forward
CNT30249355Saccharum spontaneumAvena sativa51.5462.3792.11469forward
CNT3059767Saccharum spontaneumArabidopsis lyrata20.3326.0985.95185forward
CNT30265526Saccharum spontaneumBrassica rapa51.4347.1385.04468forward
CNT30953Saccharum spontaneumZea mays66.1563.6494.68602forward
CNT3041219Saccharum spontaneumChlamydomonas reinhardtii24.0738.4290.41219forward
CNT30624589Saccharum spontaneumDaucus carota11.6521.3787.74106forward
CNT30361562Saccharum spontaneumSorghum bicolor84.9578.1691.85773forward
CNT30430260Saccharum spontaneumPapaver somniferum23.8537.2985.25217forward
CNT30582828Saccharum spontaneumEchinochloa crusgalli72.3176.6991.64658forward
CNT30724701Saccharum spontaneumLupinus angustifolius64.9552.3584.77591forward

Expression of CNT30445850

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLKPVGHQSTNWMVRLVLIVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMDDGSKALLVISATDSCSW*

>peptide 2 (68 aa)
MAGVTLGHHGRWLKGAVGDFSHGQLLVVGLLSGDNWSVGGKHEVDPRVGHQVGLELIHIHIKSTIKPQ*

>peptide 3 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

Sequence

>CNT30445850
TCACAGATCAAGAAGCAACAATATAGGCAACCATAACGATTCTTAATAACCCAGTAACAAAGCAGAGGAATTAACCAAGTCTTACAACATCAAGTGTTGT
AAACCACAGCACACAAGGACAGATAAGTTCGGAACCGACAGACACACAACACGATAGTACGAGCCACTCAGGGCAGATCACGGGATACTTGCAGCACACA
GGCCTGACGCTGTAGCACCAGAAAGCTTCTAGTACTCGTCGCCCTCGTCGCCATCCTCACCCTCGTCGAACTCAGCACCGACCTCCTCGTAGTCCTTCTC
AAGGGCTGCCAGGTCCTCACGGGCCTCAGAGAACTCACCCTCCTCCATACCCTCACCCACGTACCAGTGCACGAAGGCACGCTTGGCGTACATGAGATCG
AACTTGTGGTCGATGCGGGAGAACACCTCCACAACACTGGTGGAGTTGGAGATCATGCACACGGCGCGCTGCACCTTGGCCAGGTCACCGCCAGGCACCA
CACTTGGAGGCTGGTAGTTGATGCCACACTTGAAGCCAGTCGGGCACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATAGTGGCCACAGCAGCATT
CACGTCCTTGGGGACCACGTCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCATGGCGGGGGTCACACTTGGCCATCATGGACGATGGCTCAAAG
GCGCTGTTGGTGATTTCAGCCACGGACAGCTGCTCGTGGTAGGCCTTCTCAGCGGAGATAACTGGAGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGT
AGGGCACCAGGTTGGTCTGGAACTCATTCACATCCACATTAAGAGCACCATCAAACCTCAATGAGGCAGTCAGGGATGAGATGACCTGCACAAGATCAGT
AACAGATAAT