Detailed information on CNT3036865


BLAST search results

BLAST vs Swiss-Prot:
sp|Q50EX7|PAL1_PETHY, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317648Cucumis meloCorylus avellana35.2729.3185.29170forward
CNT30517474Cucumis meloJuglans regia27.822.3386.57134forward
CNT3070920Cucumis meloQuercus suber15.9822.1985.7177forward
CNT30196554Cucumis meloPisum sativum29.6730.4985.31143forward
CNT30162464Cucumis meloPistacia vera3935.1483.51188forward
CNT30510882Cucumis meloSolanum lycopersicum43.5754.6984.76210forward
CNT30144087Cucumis meloMedicago truncatula32.9947.3281.76159forward
CNT3024809Cucumis meloPopulus trichocarpa34.6516.1783.23167forward
CNT30113881Cucumis meloFicus carica29.0513.0482.86140forward

Expression of CNT3036865

Peptides detected in this lncRNA

>peptide 1 (66 aa)
QNSDFSTDKSQFIGRGVPFQLSRHSSKGSMIFPSQIALKTLSNSSPGDFTFSPVNISVSNSSLTNL*

>peptide 2 (47 aa)
MCLKSMAWQRATKNVVLINFKISIASAVFLDEIKPNEFTSWLCCSAL*

Sequence

>CNT3036865
CACAGAACAGTGATTTTTCCACTGACAAGTCTCAATTTATAGGAAGAGGAGTCCCATTCCAACTCTCAAGGCATTCAAGCAAAGGATCAATGATTTTCCC
TTCACAAATTGCACTAAAAACTTTGTCAAATTCTTCTCCAGGAGATTTCACTTTTTCACCGGTCAATATATCAGTTTCCAATTCTTCTCTAACAAATTTG
TAAATTGGATTCTCCTCTATGTGTCTCAAATCTATGGCTTGGCAAAGAGCCACTAAGAACGTTGTGCTCATTAACTTCAAGATATCTATTGCCTCAGCTG
TTTTTCTTGATGAGATTAAACCCAATGAGTTCACATCTTGGTTGTGTTGTTCTGCACTTTGAACATGATTGGTGACCGGATTTGCTAAGTATTGTAATTC
TGAGCAATAGGAAGCCATGGCAATTTCGGCCCCTTTAAATCCATAATCCAAGCTTGGATTACTTCCTCCTGAGAGATTTGAA