« Back to Vigna unguiculata search


Detailed information on CNT30628619


BLAST search results

BLAST vs Swiss-Prot:
sp|P27991|PAL1_SOYBN, E-value = 0.0

BLAST vs NONCODE:
NONVVIT002503, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533290Vigna unguiculataEucalyptus grandis21.9316.7281200forward
CNT3069045Vigna unguiculataQuercus suber47.710083.45435forward
CNT30196554Vigna unguiculataPisum sativum32.4663.1185.14296forward
CNT30710382Vigna unguiculataGlycine max27.4138.8885.2250forward
CNT30162464Vigna unguiculataPistacia vera27.9647.6683.14255forward
CNT30636617Vigna unguiculataCapsicum annuum53.437.481.11487forward
CNT3092362Vigna unguiculataSolanum tuberosum62.0629.8281.98566forward
CNT30510944Vigna unguiculataSolanum lycopersicum52.8597.5780.71482forward
CNT30242898Vigna unguiculataAvena sativa45.527.9578.8415forward
CNT30573527Vigna unguiculataVitis vinifera97.2658.0981.62887forward
CNT3023983Vigna unguiculataPopulus trichocarpa46.2740.8181.75422forward
CNT3038180Vigna unguiculataCucumis melo78.9565.5781.25720forward
CNT30329128Vigna unguiculataDioscorea rotundata64.4723.1378.74588forward

Expression of CNT30628619

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MELLSILHVGTSIQNVLHDGSSLNLTRVVL*

>peptide 2 (65 aa)
MSLPMDAIAKRVLSMETPIGVPWKLPPCNALFLETSISGLSFTELISLSIDLVEKRMTSMRGPSH*

>peptide 3 (47 aa)
MADRTSDNTASIFASKRTIEAKPEPTAVPLTRARPSLGCNSKNSELM*

Sequence

>CNT30628619
CTAGCAGTGAGATTTGAAGGCAGACCGTTGTTGTAAAAATCATTGACAAGCTCGGAGAATTGAGCAAACATGAGTTTGCCAATGGATGCAATAGCCAAAC
GTGTGTTGTCCATGGAGACTCCGATCGGGGTTCCTTGGAAATTACCACCATGCAATGCCTTGTTCCTTGAAACATCAATAAGTGGGTTGTCATTCACAGA
GTTAATCTCTCTCTCGATTGACTTGGTGGAGAAACGGATGACTTCAATGAGAGGACCAAGCCACTGAGGTGAAGTTCTGAGGGCATATCTATCTTGTTTT
GGCTTTTGCAAAGGATCAATTTCATGGAGCTTCTTAGCATCCTTCATGTAGGAACTTCCATCCAAAATGTGCTCCATGATGGCAGCAGCCTCAATTTGAC
CAGGGTGGTGCTTTAACTTGTGTGTCAAATGATCAGTGAACTCGGGCTTTCCTTGCATCACTTCGGCAAAAATGGCTGATAGAACTTCAGACAACACAGC
CAGTATATTTGCCTCAAAGAGAACAATAGAAGCCAAGCCAGAACCCACAGCCGTGCCATTAACAAGGGCAAGGCCTTCCTTGGGCTGCAATTCAAAGAAC
TCAGAATTGATGTGAGCCGATTCAAAAGCTTGCTTGGCATTAAGTACTTCTCCTGAAGGTCCAACAGCTTTGGAGTTGGGTCTGCCAGTTAGCAAACCAG
CAATATAGGAAAGTGGAACAAGATCTCCAGAAGCTGTGATTGTACCACGAAGAGGCAAGCATGGGGTAACGTTGTTGTTAAGGAGCTTGGTAATGGCTTC
CAAGATTTCAAATCTGATGCCTGAATAGCCTTGAAGAAGAGTGTTGATCCTCACTAGCATGGCTGCTCTAGTTGCTGTGTGTGGCAGTGTGTGGCTTGAT
TCAGTCCCATTT