« Back to Solanum lycopersicum search


Detailed information on CNT30510882


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533290Solanum lycopersicumEucalyptus grandis78.9125.3378.88303forward
CNT30317648Solanum lycopersicumCorylus avellana51.333.9783.25197forward
CNT30517474Solanum lycopersicumJuglans regia53.6534.3387.38206forward
CNT3070920Solanum lycopersicumQuercus suber34.3838.0485.61132forward
CNT30630760Solanum lycopersicumVigna unguiculata38.5419.683.78148forward
CNT30162464Solanum lycopersicumPistacia vera99.7471.5983.81383forward
CNT30636813Solanum lycopersicumCapsicum annuum99.7422.4892.17383forward
CNT30225299Solanum lycopersicumHordeum vulgare41.6747.3480160forward
CNT30568715Solanum lycopersicumActinidia chinensis53.9142.4283.09207forward
CNT30144087Solanum lycopersicumMedicago truncatula66.4175.8980.39255forward
CNT30435636Solanum lycopersicumAegilops tauschii30.9917.2581.51119forward
CNT30135526Solanum lycopersicumLolium perenne30.9913.9383.19119forward
CNT3026176Solanum lycopersicumPopulus trichocarpa76.8238.9782.37295forward
CNT3036865Solanum lycopersicumCucumis melo54.6943.5784.76210forward
CNT30329128Solanum lycopersicumDioscorea rotundata56.518.5482.49217forward
CNT30113881Solanum lycopersicumFicus carica64.322379.76247forward

Expression of CNT30510882

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSTASAVFLAEIKPNEFTSWLCCSALWTWLVTGFARN*

>peptide 2 (35 aa)
MTLASRCLQPQRFSLLRLSPMNSHLGCVAQHFGHG*

Sequence

>CNT30510882
CTCAAGTTCTCCTCCAAATGCCTCAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCCTCAGCGGTTT
TCCTTGCTGAGATTAAGCCCAATGAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGA
GCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAG
TCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCA