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Detailed information on CNT30517474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Juglans regiaOryza sativa21.3314.6382.03128forward
CNT30533290Juglans regiaEucalyptus grandis25.3312.7180.92152forward
CNT30317648Juglans regiaCorylus avellana22.523.2891.11135forward
CNT3069045Juglans regiaQuercus suber51.571.0383.5309forward
CNT30628474Juglans regiaVigna unguiculata2017.8384.17120forward
CNT30196554Juglans regiaPisum sativum34.8344.5682.78209forward
CNT30710382Juglans regiaGlycine max23.1721.6282.01139forward
CNT30162464Juglans regiaPistacia vera3539.2584.76210forward
CNT30636813Juglans regiaCapsicum annuum3512.3287.14210forward
CNT3096379Juglans regiaSolanum tuberosum34.3349.8887.38206forward
CNT30562324Juglans regiaActinidia chinensis16.3346.6788.7898forward
CNT30510882Juglans regiaSolanum lycopersicum34.3353.6587.38206forward
CNT30144087Juglans regiaMedicago truncatula26.547.3283.02159forward
CNT30435636Juglans regiaAegilops tauschii20.8318.1282.4125forward
CNT30135526Juglans regiaLolium perenne38.8327.2880.26233forward
CNT30573527Juglans regiaVitis vinifera3915.3285.47234forward
CNT3024978Juglans regiaPopulus trichocarpa49.1740.1483.05295forward
CNT3036865Juglans regiaCucumis melo22.3327.886.57134forward
CNT30329128Juglans regiaDioscorea rotundata36.338.5885.32218forward
CNT30592821Juglans regiaEragrostis curvula11.3331.7888.2468forward
CNT30113881Juglans regiaFicus carica20.8311.6484125forward

Expression of CNT30517474

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MCSMIAAASIWPGWCFNLCVKWSVNSGFPCMTSAKIADKISERIAWML

>peptide 2 (38 aa)
MARRGLIPRNINQRVIVHRVDLPLNHFGCCSDHFNLWS*

Sequence

>CNT30517474
AGGGAGTTCACATCTTGGTTATGTTGCTCGGCACTTTGGACATGGTTGGTGACAGGATTGGCCAAGAATTGAAGTTCTGAGCAGTAAGACGCCATAGCAA
TTTCTGCGCCTTTGAATCCATAATCCAAGCTTGGATTCCTGCTTGCGGTGAGATTCGAAGGCAACCCATTGTTGTAAAAATCATTGACAAGCTCAGAAAA
CTGAGCAAACATTAGCTTCCCGATTGCGGCAATGGCTAGGCGGGGCCTTATTCCTCGAAACATCAATCAGAGGGTTATCGTTCACAGAGTTGATCTCCCG
CTCAATCATTTTGGTTGCTGTTCTGATCACTTCAATTTGTGGTCCTAGCCATTGGGGAGAGGTTCGGAGGGCGTATCGGTCTTGTTTGGGCTTCTGAAGG
GGATCGATATCATGCAACTTTTGAGCTGCTTTAACATAAGCACTTCCATCTAAAATGTGTTCCATGATAGCTGCTGCCTCAATCTGGCCCGGGTGGTGCT
TCAATTTATGTGTCAAGTGGTCTGTAAATTCAGGCTTTCCTTGCATGACTTCGGCGAAAATTGCCGACAAGATTTCTGAGAGAATTGCTTGGATGTTGGC