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Detailed information on CNT30149007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Brachypodium distachyonSetaria italica48.4745.9392.41158forward
CNT30535895Brachypodium distachyonEucalyptus grandis38.6522.7486.51126reverse complement
CNT30730672Brachypodium distachyonCorchorus capsularis36.8111.9985.83120reverse complement
CNT30508142Brachypodium distachyonNicotiana attenuata42.6431.8189.21139forward
CNT30161394Brachypodium distachyonPistacia vera26.384087.2186reverse complement
CNT3095993Brachypodium distachyonSolanum tuberosum37.123.0285.95121reverse complement
CNT30179302Brachypodium distachyonSecale cereale97.8549.5394.36319reverse complement
CNT30301056Brachypodium distachyonTriticum aestivum97.8524.0694.67319reverse complement
CNT30401480Brachypodium distachyonTriticum turgidum56.1325.3896.17183forward
CNT30509957Brachypodium distachyonSolanum lycopersicum42.6410.9687.05139reverse complement
CNT3017974Brachypodium distachyonZea mays97.8511.7892.79319reverse complement
CNT30605785Brachypodium distachyonGossypium raimondii29.148.5886.3295reverse complement
CNT30232563Brachypodium distachyonAnanas comosus52.765.0292.44172reverse complement
CNT30689283Brachypodium distachyonTriticum urartu97.8512.5794.67319reverse complement

Expression of CNT30149007

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PGSAKSNCSGWCFDFFWKGSVCELSISRIGWIYPTAL*

Sequence

>CNT30149007
GCCTGGGTCTGCTAAATCTAACTGTAGTGGTTGGTGTTTTGATTTTTTTTGGAAAGGGAGTGTGTGCGAGTTGTCTATTTCAAGAATAGGTTGGATCTAT
CCGACTGCACTTTAGAATATTTCGTAGTATTTTTCGGATAAATAAGGGTGCGCAATCTCGACGAATTACTTCTGAATAAATTCAGAAATCATATGGAAGA
ACCATAGCATTTCGCGACTCGTTGGTAAATCAACTTTGATTCTCTATAAACCAATTAATGTGAGACTATTAACACGGTTAAAGCTAAACTGCTTGAAGTC
CAGGCAAAAAGGGGTACTCTTTCTAC