Detailed information on CNT30161394


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Pistacia veraSetaria italica36.7422.9786.0879reverse complement
CNT30535895Pistacia veraEucalyptus grandis38.1414.889.0282forward
CNT30730672Pistacia veraCorchorus capsularis40.478.6990.887forward
CNT30508142Pistacia veraNicotiana attenuata40.4719.9189.6687reverse complement
CNT30179302Pistacia veraSecale cereale49.7716.6186.92107forward
CNT30308867Pistacia veraTriticum aestivum49.7722.8686.92107reverse complement
CNT30401480Pistacia veraTriticum turgidum49.7714.8486.92107reverse complement
CNT30509957Pistacia veraSolanum lycopersicum40.476.8686.2187forward
CNT3017917Pistacia veraZea mays48.842.5387.62105forward
CNT30605785Pistacia veraGossypium raimondii55.3510.7586.55119forward
CNT30232563Pistacia veraAnanas comosus50.73.1888.99109forward
CNT30689283Pistacia veraTriticum urartu49.774.2286.92107forward
CNT30149007Pistacia veraBrachypodium distachyon4026.3887.2186reverse complement

Expression of CNT30161394

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LRLYFKRFCFNHAHVNDPALLVCLIENQSRFTNESQNAIVLKYDFQFIQK*

>peptide 2 (28 aa)
MIFNLFRSNSQNRAPFSVLVRTKKKIQLV

Sequence

>CNT30161394
CTACGTCTGTACTTCAAACGGTTTTGCTTTAACCATGCTCATGTTAATGATCCTGCATTATTGGTTTGTTTGATAGAGAATCAAAGTAGATTTACCAATG
AATCACAAAACGCTATAGTTCTTAAATATGATTTTCAATTTATTCAGAAGTAATTCGCAGAATCGTGCACCTTTTTCAGTCCTAGTTAGAACAAAAAAAA
AAATACAACTGGTCG