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Detailed information on CNT30509957


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2MIE8|RK22_SOLBU, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Solanum lycopersicumSetaria italica8.9933.1487.72114reverse complement
CNT30508142Solanum lycopersicumNicotiana attenuata32.2693.5994.87409reverse complement
CNT30161394Solanum lycopersicumPistacia vera6.8640.4786.2187forward
CNT30179302Solanum lycopersicumSecale cereale14.9129.3584.13189forward
CNT30308867Solanum lycopersicumTriticum aestivum14.9840.684.74190reverse complement
CNT30401480Solanum lycopersicumTriticum turgidum14.9826.3584.74190reverse complement
CNT30149007Solanum lycopersicumBrachypodium distachyon10.9642.6487.05139reverse complement
CNT30336888Solanum lycopersicumCynara cardunculus22.719.0287.15288forward

Expression of CNT30509957

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MLCLDFKQFVLTMLIVPHYWLIENQNKFTNESRNAMVLTYNLRIYTEVIREIMHLSFLLITEKGTVGWSNLFLK*

>peptide 2 (66 aa)
MRIVIRLYPKKIRLLAKCVSKELLCRCSINLVVGYFFVSFYSFPAMFQWDDRPNINLKVAKLHKSY*

Sequence

>CNT30509957
ACAAAACTTAATTGCCTTCTATAAACTAAAAGGTCACCTATTTTAGGTATGAGAATAGTTATTCGTTTATATCCAAAAAAGATTAGACTTCTAGCTAAAT
GTGTTTCTAAGGAGTTATTGTGCCGTTGCTCGATCAATTTGGTAGTTGGATATTTTTTTGTATCATTTTACAGTTTTCCGGCTATGTTCCAGTGGGATGA
CAGGCCAAATATAAATTTGAAGGTTGCCAAGTTGCATAAAAGTTATTGACCTACTGTTAGTTTAATAATATTTTACGACGTGCTGAATAGGAAGATAAAG
TATTAGGTGTTTCGCAAAGTTGTTTCTTTTTTTTTCAAATCCAAAAAGTTCTTCTTACTTAGAATAGGTCGTCGATTCAGCAATAGATAAAGGGGGTAAA
ATCCCTGTTTTTACAATTTACAATAAGCGGTTTAAATCATTTTATCAATATGAGTATCCTATATCGATAAATATTTATTTTGAAACCACCTCTAACATAG
TGGTAGAAAGAGTACCATGCTGTGTCTAGACTTCAAACAGTTTGTTTTAACCATGTTAATAGTTCCACATTATTGGTTAATAGAGAATCAAAATAAATTT
ACCAATGAATCGCGAAATGCTATGGTTCTTACATATAATTTAAGAATTTATACAGAAGTAATTCGCGAGATCATGCACCTCTCTTTCCTACTTATAACGG
AAAAGGGTACAGTTGGTTGGTCCAACCTATTCTTGAAATAAACAACTCGCACCTTCATTGACTTCGGCTTTACTAATGACTAAATTGGTTTCGCTGGAAC
CCATATTGTAACTAGCATTTGCTGCTGCAGAATAAACCAATTTCAAAATGGGATAACATGCTCGATAGGGCATGAGTTCTAGTATCATAAGCGTTTCCTC
ATAGGAACGTCCGCGAATTTGATCAATTACTCTTCGTGCTTTGTCAGCAGACATAGATATATGTTCACCCAAAGCATATACTTCTGTTTTTTTCTTCTTT
AGCATAAGGTTTGTCTCCTACTACTGAATCATAAGTATCTAGATTTTTTTATTAATATTAACGACGAGTATTGATGATTAAATCTCTAACTTTTGGTTTC
CTATAGCGTAAATATCCCAATGCTGTTACTTTGACGAAAGCTATATCAGACTGTGTGAAGTTCTTATGAATCATTTTTCTGCTTGAAATCATTTTGCAAG
CCCGTCACTATTTACAAGCTATTTATCTATTCTAGTTCTTGGCTCGGAGATCTATGACAAAACTAAAC