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Detailed information on CNT30401480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Triticum turgidumSetaria italica48.27101.1687.93348forward
CNT30535895Triticum turgidumEucalyptus grandis17.3422.5688125reverse complement
CNT30508142Triticum turgidumNicotiana attenuata21.2235.0188.89153forward
CNT30161394Triticum turgidumPistacia vera14.8449.7786.92107reverse complement
CNT30179912Triticum turgidumSecale cereale52.1522.0599.2376reverse complement
CNT30308436Triticum turgidumTriticum aestivum84.0585.2399.5606forward
CNT30509957Triticum turgidumSolanum lycopersicum26.3514.9884.74190reverse complement
CNT30439866Triticum turgidumAegilops tauschii33.0198.7694.96238reverse complement
CNT30667262Triticum turgidumTriticum dicoccoides26.6396100192forward
CNT3017991Triticum turgidumZea mays84.3312.290.3608reverse complement
CNT30232563Triticum turgidumAnanas comosus27.325.7592.89197reverse complement
CNT30689283Triticum turgidumTriticum urartu101.3928.8197.4731reverse complement
CNT30371086Triticum turgidumOryza glumipatula28.7169.9389.37207forward
CNT30149007Triticum turgidumBrachypodium distachyon25.3856.1396.17183forward
CNT30577762Triticum turgidumOryza barthii30.3770.4289.04219forward
CNT30604150Triticum turgidumOryza punctata70.7494.190.39510forward

Expression of CNT30401480

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKLKLLKRANKNKETTLLTMIYFYLGGRVLLIFI*

>peptide 2 (31 aa)
MPNRRPMYKKEKFFGFEEKKNNSINFHFPFI*

>peptide 3 (29 aa)
MEIAIEKKNNKERESQMNRKIHVWFGKRS*

Sequence

>CNT30401480
GAAAAGGGTGCACGATCTCGACGAATTACTTCTGAATAAATTCAGAAATCATATGGAAGAACCATAGCATTTCGCGACTCATTGGTAAATCAACTTTGAT
TCTCTATAAACCAAGAATGTGAGACCATTAACACGGTTAAAGCTAAACTGCTTGAAGTCCAGGCAAAAAGAGGTACTCTTTCTACAACTATATTAGTATT
AGTACCGAATTTAAACGGGAAATAGCTAATGTAAAATTTATCTGATATAGAACACTCATATCGATAAAATGGTTTGAACTATTTACTAGAAAAAAAAAGG
GGGCACCCTGCCCTTTTTTAACCAATGCCGAATCGACGACCTATGTATAAAAAAGAGAAATTTTTTGGATTTGAAGAAAAAAAAAATAATTCTATTAATT
TTCATTTTCCATTTATTTAGTTAGTTTTTCTTAATGAAATTGAAATTATTAAAGAGGGCAAATAAAAATAAAGAAACAACTTTGCTGACCATGATATATT
TTTATCTAGGCGGAAGAGTCCTCTTAATATTTATCTAGTCTTATATAGGTTTCGGTATATTGAAATATAAACATAAAAAAGAAGATAGAGGATAGGCTCA
TTACTTAAAAAAAGATATGGAAATAGCTATAGAAAAAAAAAATAATAAGGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGA
TCATAAAAGTTGTAAACTTAC