Detailed information on CNT30179302


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000296, E-value = 2e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Secale cerealeOryza sativa25.622.9298.79165forward
CNT30535895Secale cerealeEucalyptus grandis29.1933.9487.77188forward
CNT30282912Secale cerealeChenopodium quinoa22.3613.4391.67144forward
CNT30632292Secale cerealeVigna unguiculata21.894.788.65141forward
CNT30161394Secale cerealePistacia vera16.6149.7786.92107forward
CNT3095993Secale cerealeSolanum tuberosum31.06588.5200forward
CNT30509957Secale cerealeSolanum lycopersicum29.3514.9184.13189forward
CNT30439866Secale cerealeAegilops tauschii24.2264.7396.79156forward
CNT30598585Secale cerealeFraxinus excelsior22.521788.97145forward
CNT30205079Secale cerealeHelianthus annuus20.3418.1291.6131forward
CNT30409854Secale cerealePapaver somniferum24.0723.3888.39155forward
CNT3057337Secale cerealeAmborella trichopoda35.256.0985.02227forward
CNT30121210Secale cerealeCitrus clementina22.523.7290.34145forward
CNT30149007Secale cerealeBrachypodium distachyon49.5397.8594.36319reverse complement
CNT30604150Secale cerealeOryza punctata26.431.3790.59170reverse complement

Expression of CNT30179302

Peptides detected in this lncRNA

>peptide 1 (32 aa)
FFKSKKFLFFIHRSSIRHWLKKGRVPPFFSSK*

Sequence

>CNT30179302
TTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGT
TCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTGCCATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAG
AGTACCTCTTTTTGCCTGGACTTCAAGCATTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGT
CGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAA
AATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAG
TTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTT
CATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTT