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Detailed information on CNT30301056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000296, E-value = 1e-172

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535895Triticum aestivumEucalyptus grandis14.1833.9488.3188forward
CNT30179912Triticum aestivumSecale cereale59.246.0499.11785forward
CNT30222903Triticum aestivumHordeum vulgare15.2370.8898.51202forward
CNT30689283Triticum aestivumTriticum urartu79.2641.4399.141051forward
CNT30371086Triticum aestivumOryza glumipatula15.6970.2790.38208reverse complement
CNT3058165Triticum aestivumAmborella trichopoda4.2222.1387.556reverse complement
CNT30149007Triticum aestivumBrachypodium distachyon24.0697.8594.67319reverse complement
CNT30577762Triticum aestivumOryza barthii16.5970.7490220reverse complement
CNT30604150Triticum aestivumOryza punctata30.4774.5490.1404reverse complement

Expression of CNT30301056

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PFFFYSYFHIFFLSNEPILYLLFYVYISIYRNLYKTR*

Sequence

>CNT30301056
TCCTTTTTTTTTCTATAGCTATTTCCATATCTTTTTTTTAAGTAATGAGCCTATCCTCTATCTTCTTTTTTATGTTTATATTTCAATATACCGAAACCTA
TATAAGACTAGATAAATATTAAGAGGACTCTTCCGCCTAGATAAAAATATATCATGGTCAGCAAAGTTGTTTCTTTATTTTTATTTGCCCTCTAGTTAAT
AATTTCAATTTCATTAAGAAAAACTAACTAATAAATGGAAAATGAAAATTAATAGAATTCTTTTTTATTTTTTTCTTCAAATCCAAAAAATTTCTCTTTT
TTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGGTGCCCCCTTTTTTTTTCTAGTAAATAGTTCAAACCATTTTATCGATATGAGTGT
TCTATATCAGATAAATTTTACATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAGAGTACCTCTTTTTGCCTGGACTTCAA
GCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATA
TGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAG
ATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAA
AATATCGGTATTAAGTCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGG
ACGAACAAAGAACAAAGTTTTTTGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGAT
TAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTA
AACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCAACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGA
TAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGGAATTGCGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATC
TAATCGAAATCGAAAGAATTTTTTTT