Detailed information on CNT3017974


BLAST search results

BLAST vs Swiss-Prot:
sp|P48186|ATPF_MAIZE, E-value = 4e-67

BLAST vs NONCODE:
NONZMAT000296, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678068Zea maysSetaria viridis28.5848.8396.77774forward
CNT30535895Zea maysEucalyptus grandis6.9433.9487.77188forward
CNT30222903Zea maysHordeum vulgare7.4670.8895.05202forward
CNT3086153Zea maysVigna radiata6.2876.9281.76170reverse complement
CNT30149007Zea maysBrachypodium distachyon11.7897.8592.79319reverse complement

Expression of CNT3017974

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MAISISFFYVMSLSSILSFLFVFLYTQTYIRLDEY*

>peptide 2 (52 aa)
MNLSIHLALPLLFFFFVMYYGYFHIFFLCNEPILYPLFSVCISIYPNLYKTR*

>peptide 3 (73 aa)
MSVLYQINSTLAISRLKHFETNTNVVVERVPLFARTSSSLALTVLMVSHYWSIENQSKFTNESRNAMVLPYDF*

>peptide 4 (40 aa)
MAPRMPILARIVRKCNSVFKQLFRVPRAPCTACWKTRCRT*

>peptide 5 (49 aa)
MKVDYLAIKFTIFMISSRTKHESFDSFGSPAPFFLFCYVLWLFPYLFFM*

Sequence

>CNT3017974
TGGAAGCAAGGGAAAAATAATGCCTAAATTCTAAACAAAAGTAGAAGTTCAAAACCTAATAAATTGAATTATCTCTTCCATTCTATGGCCCCGAGAATGC
CAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACAGCTTGTTGGAAAACCCGTTGTCG
GACCTGATTCATCGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCTAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTTCT
TTTTCTCGTTCTATTTCAGAGTATCCATTCATTCGATACTCATCTGCTTCCAGTTCGACTTTCTGTAATCGAATACGAGCTTTTTCGAGTTGTTCAAGGG
TCCCTTTACGCAATTCTTCCGAATTTCGAATAGTACTTAAAATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATCTTGCTATTA
AGTTTACAATTTTTATGATCTCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCCCGCTCCTTTTTTTCTTTTTTGTTATGTATTATGGCT
ATTTCCATATCTTTTTTTTATGTAATGAGCCTATCCTCTATCCTCTCTTTTCTGTTTGTATTTCTATATACCCAAACTTATATAAGACTAGATGAATATT
AAGAGGACTCTTCCAACTAGATAAAAATCTATCATGGTCAGCAAAGTTGTTTCTTTATTTGTGTTTGCTCTGTTAGTTAATAATTTCAATTTCATTAAGA
AAAACTAACTAAATAAATGGAAAATAAAAATTGATAGAATTCCTTTTATTTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTTTATACATAGGTCGTCGA
TTTGGCATTGGAAAAAGGGCTGCGTGCCCTTCTAGTAAATAGTTCAAACTATTTTATCGATATGAGTGTTCTATATCAGATAAATTCTACACTAGCTATT
TCCCGTTTAAAGCATTTCGAGACTAATACTAATGTAGTTGTAGAAAGAGTACCCCTTTTTGCCCGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGG
TCTCACATTATTGGTCTATAGAGAATCAAAGTAAATTTACCAATGAATCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAAGTTATTCAGAAGTAAT
TCGTCGAGATCGTGCACCTTTTCTTATTTATCAAAAAAAATACTAAAAATATTCTAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACT
CGCACACACTCCCTTTCCAAAAAAAATCAATACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTCCCA
GCGAATGGCCAGTGAGCTAAAAAAACAAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAAGAAAGTTTTTCGATTA
CTTACTTCGCTCGTCCTTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAATAATTTCTTTTAGATTAAGTCTTAGGTCTCGTTTGACCTGTGA
AAGATCTCCTTTGTTGAAATGTTCCCAAAATTCCTAAAATAAAAGGAAAAATACTTTCCACTGTCCTAAACTAAGGACGGGAAGGAAGAGGGCGAGCATA
TCCTCTAAATTGATCATGCTCAAATCAGCCCTTCTTGGGGTTCCTAGGGTATTGTCTGTCCCGATAAATACAAAATTTCCGGAATAATATAAAAAAGAAA
TAATATAATAAATAGGAGTAAAGTAAAGTATTGATATACTTAGAATTACATAAGCAAATGCCAATGTACTAAAAAAAGAAAAAAGTATCTAATCTAAAGG
ACTCATTTTCTTTTTTAGGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACCAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGAC
TAAGCAATAAAGTACCTCTTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCGGGCCC
AATAGAAGCAAGCCCTACGGCCAATCCAGCAGCAATAACGGAAGCAGCAGCAATTAGTGGATTCATGATGAGTTCCTCGTGTCAAAAAAAAAGAAATGGT
TAAGGATACAATCAACCAAGAAATTATTACTTCCAACTTCTAAGCTCTATCGGGTAGAAGTAACTAATAAGTACAAATAAATGATAATCGAAATCGTTCG
AATTACTTCGAGATCTCGTTTTTAGTTTCTAATCATTAGAGGTTTGTGTAAATCCATATGATTCTCATTATTCTATTTCTCTTTCTTTTCAACCAATCAC
TCTTTTATTCCATCCTTTTTTTTACTCTTCGATATCTTTGAGTTCCCATTTTTTCCCCTTCATCTAACATAATAAAAGACGAAATACAGGAAGAACCCCT
ATTGAAATCGAACTAATCCAAATCCAATAGGAATCAAATCAAGATATACAATTGATAACAATATGCTGCATAGAACTAGATATGGAATCCAGTTCCATAT
AGAAGGGAATTCTATATATCGGATTAGATAATGAATCTAACTTAGGAATAAAAAAAATCCCATATACATTTGTTTCTTCTATTTTGTTTGCCTATTTTCT
CATTTTCT