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Detailed information on CNT30730672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Corchorus capsularisSetaria italica11.1932.5684.82112reverse complement
CNT30535895Corchorus capsularisEucalyptus grandis35.7664.6284.64358forward
CNT30271983Corchorus capsularisChenopodium quinoa21.6818.5587.1217forward
CNT30508142Corchorus capsularisNicotiana attenuata28.8766.1386.16289reverse complement
CNT30161394Corchorus capsularisPistacia vera8.6940.4790.887forward
CNT3095993Corchorus capsularisSolanum tuberosum28.777.282.64288forward
CNT30183931Corchorus capsularisSecale cereale11.8935.4286.55119reverse complement
CNT30308867Corchorus capsularisTriticum aestivum11.8925.4387.39119reverse complement
CNT30172743Corchorus capsularisTrifolium pratense5.1925.1288.4652reverse complement
CNT30605785Corchorus capsularisGossypium raimondii22.8820.6993.01229forward
CNT30367017Corchorus capsularisSorghum bicolor16.2841.7983.44163reverse complement
CNT30149007Corchorus capsularisBrachypodium distachyon11.9936.8185.83120reverse complement
CNT30551824Corchorus capsularisOryza brachyantha7.5931.1589.4776forward

Expression of CNT30730672

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLMVPDYWLIENQSRCTNELRNAMVLKYDFKIYSEVIRGIIALLSFLVRMKKVQLGKSSLFLK*

>peptide 2 (44 aa)
MSLPSPSLLYSYSKILKRITNPRPEYSEDSSDQNRKYIKKLNKV*

>peptide 3 (88 aa)
LRKRARAFSSCSIAPPRSSSEFRIVFKILSFRLSNKSLNESRLSLHSFFYFKNSMIPSRTKYESFDSFGSHAQLFIIYWELIPICFFF*

Sequence

>CNT30730672
CTTGCGTAAGCGGGCCCGGGCCTTTTCCAGCTGTTCAATAGCCCCCCCGCGTAGTTCTTCTGAATTTCGAATAGTATTCAAAATCCTCTCTTTTCGATTA
TCTAATAAATCACTTAATGAAAGTAGATTATCTTTACATTCATTTTTTTATTTCAAAAATTCCATGATCCCTTCCCGAACCAAATATGAATCTTTCGATT
CATTTGGCTCTCACGCTCAATTATTTATTATTTATTGGGAATTAATTCCCATATGTTTTTTTTTCTAATGAAATGAGCTTACCTTCTCCCTCTCTTCTCT
ATTCATATTCCAAAATATTGAAACGGATCACTAATCCAAGACCAGAATATTCGGAGGATTCTTCTGACCAAAATAGAAAATATATCAAAAAACTAAATAA
AGTATAATAAATTTTACTAAATAAATAATACTAAATAAATAATATATAAATAATAGAATAAAAAAAAATATATAATTTATATATAATTTATAATTGTATA
ATTGTAATTGTACTTATAATTGTATTGTATAATTGTAATTTGTCAGCAAAGTTGTTTCTTTTTTTTCTTCAAATTCAAAGAATTCTTTTCACTTTATACA
TAGGTCATCGATTCAGCATTGGAAAAAGGGGCTCAAATCGTTTTATCGACATGAGTGTTTTATATCGAAAAAACATTTTCAACTATTTGTTTTGAAAATA
TTTCTGTATTTATTAACATACGTAGTAGAAAGAGTACCCTGCTGCATCTGAACTTCAAACGCTTTGGTCTTAACCATGTTAATGGTCCCAGATTATTGGT
TAATAGAGAATCAAAGTCGATGTACCAATGAATTACGAAATGCTATGGTTCTTAAATATGATTTTAAAATTTATTCAGAAGTAATTCGCGGGATCATTGC
ACTCCTTTCTTTCCTAGTTAGAATGAAAAAAGTGCAACTGGGTAAATCCAGCCTATTCTTGAAATAAACCAACTCGCACACACTCCCTTTCCAAAAAAGA
T