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Detailed information on CNT30535895


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Eucalyptus grandisOryza sativa29.62.987.2164forward
CNT30678565Eucalyptus grandisSetaria viridis29.617.8686.59164forward
CNT30521912Eucalyptus grandisSetaria italica21.4834.5985.71119reverse complement
CNT30282912Eucalyptus grandisChenopodium quinoa29.615.393.29164forward
CNT30730672Eucalyptus grandisCorchorus capsularis45.8525.3785.83254forward
CNT30632292Eucalyptus grandisVigna unguiculata29.965.5387.35166forward
CNT30505351Eucalyptus grandisNicotiana attenuata29.64.7292.68164forward
CNT30161394Eucalyptus grandisPistacia vera14.838.1489.0282forward
CNT3095993Eucalyptus grandisSolanum tuberosum78.3410.8484.56434forward
CNT30179302Eucalyptus grandisSecale cereale33.9429.1987.77188forward
CNT30301056Eucalyptus grandisTriticum aestivum33.9414.1888.3188forward
CNT30222903Eucalyptus grandisHordeum vulgare23.2945.2686.05129forward
CNT30401480Eucalyptus grandisTriticum turgidum22.5617.3488125reverse complement
CNT30541474Eucalyptus grandisBrassica napus28.525.1793.67158forward
CNT30511193Eucalyptus grandisSolanum lycopersicum29.069.0990.06161forward
CNT30145240Eucalyptus grandisMedicago truncatula26.3526.2686.99146forward
CNT30660677Eucalyptus grandisTriticum dicoccoides29.612.2985.37164forward
CNT30598585Eucalyptus grandisFraxinus excelsior29.619.2393.9164forward
CNT3017974Eucalyptus grandisZea mays33.946.9487.77188forward
CNT30605785Eucalyptus grandisGossypium raimondii51.8125.9388.5287forward
CNT30232563Eucalyptus grandisAnanas comosus33.945.4990.43188forward
CNT30205079Eucalyptus grandisHelianthus annuus29.622.6891.46164forward
CNT30689283Eucalyptus grandisTriticum urartu33.947.4187.77188forward
CNT30621081Eucalyptus grandisCajanus cajan26.3513.9888.36146forward
CNT30409854Eucalyptus grandisPapaver somniferum29.624.7492.68164forward
CNT3057337Eucalyptus grandisAmborella trichopoda33.945.0489.89188forward
CNT30121210Eucalyptus grandisCitrus clementina29.64.2191.46164forward
CNT30149007Eucalyptus grandisBrachypodium distachyon22.7438.6586.51126reverse complement

Expression of CNT30535895

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLMVPHYWLIENQSAFTNESRNVMVLKYYLLIYSEVIHGIMHLLLFTSYNEKKWS*

>peptide 2 (30 aa)
KSVTFFPIKVSNNFIDMSVLYRRKNFNYLF*

>peptide 3 (30 aa)
MLHLNFKRFSFNHVNGPTLLVNRESKCIYQ*

Sequence

>CNT30535895
AAAGAGTGTGACCTTTTTTCCAATAAAGGTTTCAAATAATTTCATCGACATGAGTGTTCTCTATCGAAGAAAAAATTTCAATTATTTGTTTTGAAACCCT
TATGTATTAAATTAACATAGTAGTAAAAAGAATACCATGCTACATTTAAACTTCAAACGATTTAGCTTTAACCATGTTAATGGTCCCACATTATTGGTTA
ATCGAGAATCAAAGTGCATTTACCAATGAATCACGAAATGTTATGGTTCTTAAATATTATTTATTAATTTATTCAGAAGTAATTCACGGGATCATGCATC
TTTTACTTTTTACTAGTTATAATGAAAAAAAGTGGAGCTGATTTAGTCTAGCCAATTCTTGAAATAAACAACTCGCACACACTCCCTTTCCAAAAAGGAT
CAATACACCAAGGACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCGGTATTAAATCCGAAACTCCTGGCCGATGGCCAGTGACCCAAGGAAATG
AAAGAATCGGTTACATTTTTCATACAATCTCCTCTTATAGATGAAATTAAAAAA