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Detailed information on CNT30456083


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564031Saccharum spontaneumActinidia chinensis23.7412.5790.5985forward
CNT30145818Saccharum spontaneumMedicago truncatula30.4510.7483.49109forward

Expression of CNT30456083

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SSWPWVVVSLSVPATSMVPLSTLMPGRTPPSLRTSTKGLPSLVFW*

>peptide 2 (51 aa)
MYWRAPGQQKRSSRRARRFSSTFSTLMLERRLPMVPVDSSAARIPLPGVPM*

Sequence

>CNT30456083
GTCATCATGGCCTTGGGTGGTGGTCTCCTTGTCGGTGCCTGCAACCTCAATGGTGCCCTTGTCGACCTTGATGCCAGGTAGGACGCCTCCCTCCTTGAGG
ACATCAACAAAAGGCTTGCCATCCTTGGTCTTCTGGTAGAGGGTCTCCTCGAAGAGGATCACACCACTGATGTACTGGAGGGCACCAGGGCAGCAGAAAA
GGAGCTCACGGAGGGCACGGCGGTTCTCCTCCACGTTCTCGACATTGATGCTGGAAAGGCGCTTGCCAATGGTGCCAGTGGACTCATCAGCAGCAAGGAT
ACCCTTGCCAGGGGTGCCAATGTAGGCAGCATTCTTGATGAGCTCATCTGCAAAATAA