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Detailed information on CNT30729311


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 2e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Corchorus capsularisOryza sativa23.068.9981.73104forward
CNT30549621Corchorus capsularisIpomoea triloba31.0438.2581.43140forward
CNT30378260Corchorus capsularisArabidopsis thaliana47.0145.6980.19212forward
CNT30381565Corchorus capsularisManihot esculenta19.9621.6384.4490forward
CNT3044799Corchorus capsularisPrunus dulcis64.7553.0980.48292forward
CNT30160060Corchorus capsularisPistacia vera58.7625.5880.75265forward
CNT30469220Corchorus capsularisSaccharum spontaneum23.737.2882.24107forward
CNT30366513Corchorus capsularisSorghum bicolor23.7319.1486.92107forward
CNT30704258Corchorus capsularisPrunus avium34.1525.6780.52154forward
CNT3024022Corchorus capsularisPopulus trichocarpa59.6554.0286.25269forward
CNT30150459Corchorus capsularisBrachypodium distachyon21.2914.9385.4296forward
CNT30103064Corchorus capsularisOryza rufipogon23.0612.0481.73104forward
CNT30577272Corchorus capsularisOryza barthii23.0610.1681.73104forward
CNT30112808Corchorus capsularisFicus carica54.9930.583.06248forward

Expression of CNT30729311

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRAFKTKKMAKTIPGNMNAVLRATFFHSPPLNILYRREEDDHQGIDN*

>peptide 2 (43 aa)
PNGRIPPIRIEKTGFIYQACSGICLGILFVFTGSSIAGFLNPT*

>peptide 3 (52 aa)
SKWKNSSYQNRENWVHIPSLLRDLPWNFVCLHGILNCWLPEPNISTHENKWN*

Sequence

>CNT30729311
TCCAAATGGAAGAATTCCTCCTATCAGAATAGAGAAAACTGGGTTCATATACCAAGCCTGCTCAGGGATTTGCCTTGGAATTTTGTTTGTCTTCACGGGA
TCCTCAATTGCTGGCTTCCTGAACCCAACATAAGCACCCACGAAAACAAGTGGAACTGAAATTCCAAACCATAGGAGGACGAGAGCAAACATAGTCCCAA
ACGGTACAGCCCCAGAAGACTTCTGGCCCCAAATGAGAGCATTTAAGACGAAGAAAATGGCAAAGACGATTCCTGGGAACATGAATGCAGTCCTAAGGGC
TACTTTCTTCCACTCTCCTCCCTTAAACATTTTGTATAGACGGGAAGAGGACGATCATCAAGGAATTGACAATTGAAAACCAGTGAATTTGGTCATCACT
CATTAAAAGATATGCATCCCATCTAGATGCCCACTTCACATCACTCTCCTG