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Detailed information on CNT30103064


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5N2|TMN9_ARATH, E-value = 4e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729311Oryza rufipogonCorchorus capsularis12.0423.0681.73104forward
CNT30366513Oryza rufipogonSorghum bicolor30.0946.5183.08260forward
CNT3024022Oryza rufipogonPopulus trichocarpa20.3735.3484.66176forward
CNT30112808Oryza rufipogonFicus carica23.524.9781.28203forward

Expression of CNT30103064

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKNSSMKTAPNGRIPPIRMVKAGFMYQACSGTCLGILLVFTGASMAGFLKPR*

>peptide 2 (46 aa)
PPPPHVILTAQLEVAQHDCNLPTSDDEDNEHEEKEAEDVVKLVKPD*

>peptide 3 (38 aa)
MSSIAVINPPRFDGERKPKTANIMVTSSIPKNWTPVPT*

>peptide 4 (47 aa)
MKNSSMKTAPNGRIPPIRMVKAGFMYPACSGICLGILLVFTGASMAD*

Sequence

>CNT30103064
CCTCCACCACCACATGTAATCCTCACTGCACAGTTGGAAGTAGCACAGCACGATTGCAATCTCCCCACAAGTGATGATGAGGATAATGAACACGAGGAAA
AGGAAGCCGAAGATGTAGTAAAACTGGTGAAGCCAGATTGAAGTGAGGATGAAAAATAGCTCAATGAAAACTGCTCCGAATGGAAGAATCCCACCAATAA
GAATGGTAAAGGCAGGGTTCATGTACCCAGCCTGCTCTGGGATCTGTCTCGGGATTTTGTTGGTCTTCACTGGAGCCTCAATGGCAGATTGAAGTGAGGA
TGAAAAATAGCTCAATGAAAACTGCTCCGAATGGAAGAATCCCGCCAATAAGAATGGTGAAGGCAGGGTTCATGTACCAAGCCTGCTCTGGGACCTGTCT
CGGGATTTTGTTGGTCTTCACTGGAGCCTCAATGGCAGGTTTCTTGAAACCAAGATAGCCCCCAACAAAGACAAGTGGAACCGAGATACCGAACCAAAGA
AGCACCAAGGCAAACATTGTGGAGAAAGGGACAGCACCTGATGATTTCTCCCCCCATATAAGAGCATTCAAGACGAAGAAAATACCAAAAGCAATTCCCG
GAAACAGGAAAGCAGTCTTCAAGGTGATGCTCTTCCATTCTGATCCTTTAAACATCTTATAGAGTCGGGAAGAAGCATATCCAGCAAACAGCCCCATCAA
GACCCAAATGAGCAGCATCGCAGTCATCAATCCTCCACGGTTTGATGGAGAAAGGAAACCCAAGACAGCAAACATCATGGTAACCAGCAGCATACCAAAG
AACTGGACACCAGTGCCAACATAGACACAGAGTAAGTCAGAGTTAGTTGGTGGGCGGAACACAT