Detailed information on CNT30160060


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5N2|TMN9_ARATH, E-value = 1e-132

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Pistacia veraOryza sativa57.9251.8679600forward
CNT30671488Pistacia veraSetaria viridis27.772.6683.97287forward
CNT30549621Pistacia veraIpomoea triloba19.8856.2880.1206forward
CNT30378477Pistacia veraArabidopsis thaliana32.1455.5984.38333forward
CNT30729311Pistacia veraCorchorus capsularis25.5858.7680.75265forward
CNT30406390Pistacia veraBeta vulgaris11.7829.0581.15122forward
CNT30490055Pistacia veraOlea europaea25.9762.780.67269forward
CNT3044799Pistacia veraPrunus dulcis32.6361.4578.7338forward
CNT30314293Pistacia veraCamelina sativa12.7441.1282.58132forward
CNT30469220Pistacia veraSaccharum spontaneum35.0424.6979.89363forward
CNT30229978Pistacia veraAnanas comosus9.9422.5482.52103forward
CNT30366883Pistacia veraSorghum bicolor21.1437.9582.65219forward
CNT3024022Pistacia veraPopulus trichocarpa28.3859.0482.31294forward
CNT30150459Pistacia veraBrachypodium distachyon17.0827.5383.05177forward
CNT30103143Pistacia veraOryza rufipogon58.0146.0279.37601forward
CNT30577272Pistacia veraOryza barthii58.0158.6978.87601forward
CNT30112808Pistacia veraFicus carica23.2629.6480.91241forward
CNT3063675Pistacia veraSelaginella moellendorffii14.8645.9785.06154forward

Expression of CNT30160060

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGFYDSKLNPNSLWNFEGTPNIHWEIICASFCRNMPATIFSVAATGESINQS*

>peptide 2 (52 aa)
MKKSSMKMAPNGRMPPMRIEKIGFMYQGCSGICLGILLVFTGSSNAGFLKPT*

>peptide 3 (58 aa)
MPNHKNTRANMVPNGTAPEDCSPHIKAFRTKKMAKQVAGNMKAVFKVIFFHSVPLNIL*

Sequence

>CNT30160060
CTCATACAAAACGGTAAAGAAAAGAACAATTAACAGGAAAAAAAAAAAGAACTGGAACTGCCATTGAACCCTGTGTCAAGAAGAAGAAGAAGAAGACGAC
TAATAACAATCTCTATGGGGTTTTATGATTCAAAACTGAATCCAAATTCACTCTGGAATTTTGAGGGCACCCCAAATATTCACTGGGAAATAATTTGTGC
TTCATTTTGTAGAAATATGCCAGCTACTATTTTTTCAGTCGCAGCAACTGGTGAATCAATCAATCAATCTTAACTGACGAGTAGATCAGCCGCGTAGAAA
CCGATCGTACCGGTAAGCAAGAAGAAGGCGTAGGAGACGATCAGCATATAACCGAAGTACAAGATCCCGGAAATTGGCTTGGTGATATCGAGCTTCGCGA
AGAAGTAGAAAGCTGCATAGAGGAAGAGATAGAATGCTGAAGAACCTGAAGTGAGGTATGATCTCCACCACCAGAGGTAATCCTCACTGCAGAGCTGGAA
GTAGCAGAGAACAATGGTGATCTCGGCACAGGTGACAATGAGAATGACAAAGACGATGAAGAGGAAACCGAATATGTAGTAGAACTGATGCAGCCATATT
GAGGTGAGAATGAAAAAGAGCTCAATGAAGATGGCTCCAAACGGAAGAATGCCTCCGATGAGGATAGAGAAGATCGGGTTCATGTACCAGGGCTGCTCTG
GGATCTGCCTTGGGATCTTGTTAGTTTTCACAGGATCCTCCAATGCTGGCTTCCTAAAGCCAACATAACTACCCACAAAGACAAGTGGGACTGAGATGCC
GAACCATAAAAATACAAGAGCAAACATGGTTCCAAATGGCACTGCACCAGAGGATTGCTCGCCCCATATTAAAGCATTCAGGACAAAGAAAATGGCAAAG
CAAGTTGCAGGGAACATGAAAGCTGTTTTCAAAGTGATTTTCTTCCATTCTGTTCCCTTGAACATCTTATAAAGACGAGCAGAAGCATATCCAGCAAATA
AACCCATAAAGATCCAAAGCAGGAGCATGACTGTCA