Detailed information on CNT30704258


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5N2|TMN9_ARATH, E-value = 5e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Prunus aviumOryza sativa32.8317.0381.22197forward
CNT30671488Prunus aviumSetaria viridis14.522.0388.5187forward
CNT30378260Prunus aviumArabidopsis thaliana2228.4585.61132forward
CNT30729311Prunus aviumCorchorus capsularis25.6734.1580.52154forward
CNT30381565Prunus aviumManihot esculenta3449.0485.29204forward
CNT30490055Prunus aviumOlea europaea2230.7782.58132forward
CNT3044799Prunus aviumPrunus dulcis21.3323.2783.59128forward
CNT30159989Prunus aviumPistacia vera36.3317.1978.9218forward
CNT30469220Prunus aviumSaccharum spontaneum24.8310.1483.22149forward
CNT30150459Prunus aviumBrachypodium distachyon22.3320.8482.84134forward
CNT30102928Prunus aviumOryza rufipogon24.8315.8283.89149forward
CNT30577272Prunus aviumOryza barthii24.6714.4583.11148forward
CNT30112808Prunus aviumFicus carica25.8319.0781.29155forward
CNT3063675Prunus aviumSelaginella moellendorffii15.527.7688.1793forward

Expression of CNT30704258

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDKLPSSLFLCFFLGLKFIILGNVTVEGS*

>peptide 2 (36 aa)
MKTQSKSMAVIRPPRLDGERKPRTAKIIVTSIMPKN*

>peptide 3 (33 aa)
MKTAPNGRIPPIRIEKTGFMYQGKHCSKWDSSG*

>peptide 4 (73 aa)
MAGFLQLESRKLGSCTRANIVPNGTAPDDFWPQIKVFKTMKMAETTAGNMTAVLKEIFFHSVPLNILYKRAEA*

>peptide 5 (37 aa)
MGRGNQGQQRSLSQVSCQRTERQFQHIHRASRSYLEP*

Sequence

>CNT30704258
AGGATGATGAACACCAAGAAGAGGAAGCCAAAGATGTAGTAGAACTGGTTCAGCCAAATTGAAGTGAGGATAAAGAACAGTTCGATGAAAACCGCTCCGA
ATGGCAGGATTCCTCCAATTAGAATCGAGAAAACTGGGTTCATGTACCAGGGCAAACATTGTTCCAAATGGGACAGCTCCGGATGATTTCTGGCCCCAAA
TCAAAGTGTTTAAGACAATGAAAATGGCAGAGACAACTGCTGGGAACATGACTGCAGTCCTGAAAGAAATTTTCTTCCATTCTGTCCCCTTAAACATCTT
GTATAAGCGAGCAGAGGCATAACCGGCGAAAAGTCCCATGAAGACCCAAAGCAAGAGCATGGCTGTCATAAGACCACCTCGGTTAGATGGGGAGAGGAAA
CCAAGGACAGCAAAGATCATTGTCACAAGTATCATGCCAAAGAACTGAACGCCAGTTCCAACATATACACAGAGCAAGTCGGAGTTATTTGGAGCCCTGA
AAACATCCCCATGGACAAGCTTCCATCCAGTCTCTTCTTGTGCTTCTTCCTGGGTCTCAAGTTCATTATACTTGGAAATGTCACGGTAGAGGGTTCTTAG