Detailed information on CNT30549621


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671488Ipomoea trilobaSetaria viridis23.7722.0382.7687forward
CNT30729311Ipomoea trilobaCorchorus capsularis38.2531.0481.43140forward
CNT30406390Ipomoea trilobaBeta vulgaris35.7931.1982.44131forward
CNT3044799Ipomoea trilobaPrunus dulcis35.7923.8283.97131forward
CNT30160060Ipomoea trilobaPistacia vera56.2819.8880.1206forward
CNT30366883Ipomoea trilobaSorghum bicolor39.8925.381.51146forward
CNT3024022Ipomoea trilobaPopulus trichocarpa55.4640.7681.28203forward
CNT30150459Ipomoea trilobaBrachypodium distachyon56.2832.0481.07206forward
CNT30112808Ipomoea trilobaFicus carica40.4418.283.11148forward

Expression of CNT30549621

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKKSSINTAPNGSMPPVKMEKSGFMYQACSGICRGILFVLTGSSIAGFLNPT*

>peptide 2 (34 aa)
TKSMHRIRLFQSSQRKHMMQSACTRNRECQKRAL*

>peptide 3 (29 aa)
MAVCLRSRWRKVDSCTRPAQVSVVEFCLF*

Sequence

>CNT30549621
AACCAAAAGCATGCATAGAATCCGATTGTTCCAGTCATCACAAAGAAAGCATATGATGCAATCAGCATGTACCCGAAATAGAGAATGCCAGAAACGAGCT
TTGTGATCTCGAGCTTAGTGAAGAAATAGAACGCTGCATAAAGGAAGAGGTAAGGATGAAAAAGAGCTCGATAAATACAGCTCCAAATGGCAGTATGCCT
CCGGTCAAGATGGAGAAAAGTGGATTCATGTACCAGGCCTGCTCAGGTATCTGTCGTGGAATTTTGTTTGTTTTGACAGGCTCCTCAATAGCTGGCTTCT
TAAATCCTACGTAACTACCAACAAAAACGAGCGGGACTGAGATTCCAAACCACAAGAAAACCAACG