« Back to Sorghum bicolor search


Detailed information on CNT30366513


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Sorghum bicolorOryza sativa46.5122.4783.46260forward
CNT30729311Sorghum bicolorCorchorus capsularis19.1423.7386.92107forward
CNT30490055Sorghum bicolorOlea europaea19.6825.6484.55110forward
CNT3044799Sorghum bicolorPrunus dulcis26.8327.2780150forward
CNT30469220Sorghum bicolorSaccharum spontaneum52.4219.9384.3293forward
CNT3024022Sorghum bicolorPopulus trichocarpa50.2756.4380.43281forward
CNT30150459Sorghum bicolorBrachypodium distachyon37.7532.8190.52211forward
CNT30103064Sorghum bicolorOryza rufipogon46.5130.0983.08260forward
CNT30577272Sorghum bicolorOryza barthii46.5125.3983.08260forward
CNT30112808Sorghum bicolorFicus carica40.4327.882.3226forward
CNT3063675Sorghum bicolorSelaginella moellendorffii18.2530.4582.35102forward

Expression of CNT30366513

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MNTAPNGRIPPIRIEKIGFMYQACSGICLGILFVFTGSSMVGFLKPRKLPTKTKGTEIPNQRRTRANIVVNGTAPEDFCPQIRAFKKKKIANTLPG

>peptide 2 (35 aa)
MEGSLQLESRRLGSCTRPAQGSALVSCLSSLDLQW*

Sequence

>CNT30366513
GTGGCAACAAAGAATTAGGCAAGAGTGCACTTCACCTTACTCGATCTTGACCGATGAGTAAATCAGCCTTGTGAACAGGAAGCACGCATAGAATCCGATT
GTGCCGGTCAAGGCAAAGAAGGCATATGAGGCAATGAGCATGTAACCAAAGTACAGAACTGCTGAGACAAACTTGGTGATCTCAAGCTTTGTGAAGAAAT
AGAAGGTTGCATACAAGAAGAGGTAGAGTGCAGAGGAACCAGATGTCAGGTAAGGATAAAGAAGAGTTCGATGAACACAGCACCAAATGGAAGGATCCCT
CCAATTAGAATCGAGAAGATTGGGTTCATGTACCAGGCCTGCTCAGGGATCTGCCTTGGTATCTTGTTTGTCTTCACTGGATCTTCAATGGTAGGTTTCT
TGAAGCCAAGGAAGCTTCCAACAAAAACCAAAGGTACTGAGATACCGAACCAAAGGAGGACAAGGGCAAACATTGTGGTGAATGGAACAGCACCTGAAGA
CTTTTGCCCCCAGATAAGAGCATTCAAGAAGAAGAAAATAGCAAACACACTGCCAGGGA