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Detailed information on CNT30381565


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RWW1|TMN10_ARATH, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Manihot esculentaOryza sativa86.7831.279.22361forward
CNT30729311Manihot esculentaCorchorus capsularis21.6319.9684.4490forward
CNT30469220Manihot esculentaSaccharum spontaneum78.3722.1879.14326forward
CNT30229978Manihot esculentaAnanas comosus20.1918.3884.5284forward
CNT30366883Manihot esculentaSorghum bicolor44.9532.4180.75187forward
CNT30704258Manihot esculentaPrunus avium49.043485.29204forward
CNT30102948Manihot esculentaOryza rufipogon51.6813.7880215forward
CNT30577272Manihot esculentaOryza barthii86.7835.2579.22361forward

Expression of CNT30381565

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GRMPPIRIEKTGFMYQSMSMAVINPPRFEGERKPRAAKIMVTRIIPKN*

Sequence

>CNT30381565
TGGGAGAATGCCTCCAATAAGGATAGAGAAGACTGGGTTCATGTACCAGAGTATGAGCATGGCTGTCATCAACCCACCTCGGTTTGAAGGGGAGAGGAAA
CCAAGGGCCGCAAAGATCATGGTAACAAGAATCATCCCAAAAAACTGAACCCCTGTCCCAACATAGACACAGAGTAAGTCTGAATTTGATGGGGGCCTGA
AAACATCCCCATGGACCAATTTCCACCCAGTCTCTTCTTGGGCTTCTTCTTGGGTCTCTAATTGATTGTATTTAGAGATATCCCGGTAAAGTGTCCGTAA
CATAATCATAGCCACCATCCCAGAAAGGAAAAGGACAATCATCAATGAGTTGACAATTGAAAACCAGTGAATCTGATCATCAGCCATCAGAAGATAGGTA
TCCCACCGAGATGCCC