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Detailed information on CNT30112808


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 5e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Ficus caricaOryza sativa24.9717.5581.77203forward
CNT30549621Ficus caricaIpomoea triloba18.240.4483.11148forward
CNT30378260Ficus caricaArabidopsis thaliana19.0733.4186.45155forward
CNT30729311Ficus caricaCorchorus capsularis30.554.9983.06248forward
CNT30160060Ficus caricaPistacia vera29.6423.2680.91241forward
CNT30469220Ficus caricaSaccharum spontaneum27.1815.0380.54221forward
CNT30366513Ficus caricaSorghum bicolor27.840.4382.3226forward
CNT30704258Ficus caricaPrunus avium19.0725.8381.29155forward
CNT3024022Ficus caricaPopulus trichocarpa36.7860.0480.6299forward
CNT30150459Ficus caricaBrachypodium distachyon19.3124.4284.71157forward
CNT30103064Ficus caricaOryza rufipogon24.9723.581.28203forward
CNT30577272Ficus caricaOryza barthii24.9719.8281.28203forward

Expression of CNT30112808

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKKSSMKTAPKGRIPPMRMEKTGFMYQACSGICLGILLVFTGSSMAGFLNPT*

>peptide 2 (49 aa)
MVPNGTAPDDFWPQMSAFKTKKMAETIAGNKTAVLSAILFHSDPLNILYK

>peptide 3 (37 aa)
MLQGKRKPYLNFKSYTKRHCFALFQNGRERYNQHQSP*

>peptide 4 (34 aa)
MVPVSTKNAYETINMYPKYKRADTIFVISSFVKK*

Sequence

>CNT30112808
TAGCATTTTCTCCTAATTACGGGCACAACACTGGAATTATGATAGTTAGCTACAAACATAAATTGATAGGGATTAATATGGAATAGTTCTAAGAAAAATT
TGAACGAATACAGTAGTATAACAGAGTTATGACCTTGTCACCGTTCAAAATTGAGTAGAAGATGTTACAAGGGAAAAGAAAACCATACCTTAATTTCAAA
TCTTACACTAAAAGACACTGTTTTGCATTGTTTCAAAACGGGAGAGAGAGATATAACCAGCACCAATCACCTTAGTCGATCTTCACGGAGGAGTAAATAA
GCCTCGTGAACCAGAAGCATGCGTAGAAACCGATGGTGCCGGTGAGCACAAAGAATGCGTATGAAACAATCAACATGTATCCGAAGTATAAGAGGGCAGA
CACCATCTTCGTGATTTCAAGCTTCGTGAAGAAGTAAAAGGTGAGGATGAAGAAGAGCTCGATGAAGACGGCGCCGAAGGGGAGGATTCCTCCAATGAGA
ATGGAGAAAACCGGGTTCATGTACCAGGCCTGCTCAGGAATCTGCCTTGGGATTTTGTTGGTCTTCACGGGGTCTTCAATGGCTGGTTTCTTGAATCCTA
CGTAGCTGCCGACGAATACAAGTGGGACCGAGATTCCGAACCACAAGACGACAAGGGCAAACATGGTTCCAAACGGCACAGCCCCGGACGATTTCTGGCC
CCAGATGAGTGCGTTTAAGACGAAGAAAATGGCGGAGACAATAGCAGGGAACAAGACGGCGGTTCTGAGCGCAATCCTCTTCCATTCTGATCCTTTAAAC
ATTTTGTACAAAC