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Detailed information on CNT3024022


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695507Populus trichocarpaOryza sativa35.3415.2185.23176forward
CNT30549621Populus trichocarpaIpomoea triloba40.7655.4681.28203forward
CNT30378260Populus trichocarpaArabidopsis thaliana51.8155.681.78258forward
CNT30729311Populus trichocarpaCorchorus capsularis54.0259.6586.25269forward
CNT3044799Populus trichocarpaPrunus dulcis55.8250.5584.17278forward
CNT30160060Populus trichocarpaPistacia vera59.0428.3882.31294forward
CNT30469220Populus trichocarpaSaccharum spontaneum39.5613.482.23197forward
CNT30338263Populus trichocarpaEragrostis tef22.6950.983.19113forward
CNT30366513Populus trichocarpaSorghum bicolor56.4350.2780.43281forward
CNT30150459Populus trichocarpaBrachypodium distachyon37.7529.2482.98188forward
CNT30103064Populus trichocarpaOryza rufipogon35.3420.3784.66176forward
CNT30577272Populus trichocarpaOryza barthii35.3417.1984.66176forward
CNT30112808Populus trichocarpaFicus carica60.0436.7880.6299forward
CNT3063675Populus trichocarpaSelaginella moellendorffii21.2931.6482.08106forward

Expression of CNT3024022

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MEEFLRLGLRRLGSCTKPALGSVSEFCLSSQGPQLLAS*

>peptide 2 (71 aa)
MYPKYKAPETSLVISSFVRMKKSSMKTAPNGRIPPIRIEKAGFMYQACSGICLGILFVFTGSSIAGFLNPI*

>peptide 3 (36 aa)
MHRIRLSQLARKMHTMQLACIRSTRPLKQVWLSQAL*

Sequence

>CNT3024022
GTTTTGGACGTCGAGGTAGAGGAAGAAAGGGATCTGCTAGAGTTAATCAATTTTCACTGACGAATAGATGAGCCTTGTGAACCATAAGCATGCATAGAAT
CCGATTGTCCCAGTTAGCACGAAAAATGCATACGATGCAATTAGCATGTATCCGAAGTACAAGGCCCCTGAAACAAGTTTGGTTATCTCAAGCTTTGTGA
GAATGAAGAAAAGCTCGATGAAAACAGCTCCAAATGGAAGAATTCCTCCGATTAGGATTGAGAAGGCTGGGTTCATGTACCAAGCCTGCTCTGGGATCTG
TCTCGGAATTTTGTTTGTCTTCACAGGGTCCTCAATTGCTGGCTTCTTGAACCCAATATAGCTTCCAACAAACACTAAGGGAACTGAAATTCCAAACCAT
AAGAATATAAGAGCAAACATTGTCCCAAATGGCACAGCCCCAGAAGATTTCTGGCCCCAAATGAGAGCATTCAAGACAAAGAAAATGGCAGAGACGAC