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Detailed information on CNT30378260


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 9e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729311Arabidopsis thalianaCorchorus capsularis45.6947.0180.19212forward
CNT30406390Arabidopsis thalianaBeta vulgaris27.5930.4881.25128forward
CNT30490055Arabidopsis thalianaOlea europaea38.1541.2680.79177forward
CNT30704258Arabidopsis thalianaPrunus avium28.452285.61132forward
CNT3024022Arabidopsis thalianaPopulus trichocarpa55.651.8181.78258forward
CNT30150459Arabidopsis thalianaBrachypodium distachyon61.6444.4880.42286forward
CNT30112808Arabidopsis thalianaFicus carica33.4119.0786.45155forward

Expression of CNT30378260

Peptides detected in this lncRNA

>peptide 1 (82 aa)
IDEPCEPETSIEPYCSCEHKKCVGGDEHVPKVKHRRDQFGDLKLCEEVERGIEEEEPKDVVELVEPDGCEDEEELDEDCTKR*

>peptide 2 (56 aa)
MDVRMKKSSMKTAPNGKIPPMRIEKTGFMYQACSGICLGILLVFTGSSAAGFLNPM*

Sequence

>CNT30378260
ATAGATGAGCCTTGTGAACCAGAGACAAGCATAGAACCCTATTGTTCCTGTGAGCACAAAAAATGCGTAGGAGGCGATGAGCATGTACCCAAAGTAAAGC
ATCGCAGAGACCAGTTTGGTGATCTGAAGCTTTGTGAAGAAGTAGAACGTGGCATAGAGGAAGAGGAACCCAAAGATGTAGTAGAACTGGTTGAGCCAGA
TGGATGTGAGGATGAAGAAGAGCTCGATGAAGACTGCACCAAACGGTAAGATTCCTCCAATGAGGATTGAGAAAACCGGGTTCATGTACCAAGCTTGCTC
TGGGATTTGCCTCGGGATTTTGTTGGTTTTCACTGGGTCATCAGCCGCTGGCTTCTTGAACCCAATGTAACCCCCAACAAAGACGAGAGGAACTGAGATG
CCAAACCAGAGGAAGATCAAGGCGAACATTGTTCCAAAGGGGACAGCCCCAGATGACTTCTGTC