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Detailed information on CNT30727924


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 8e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Corchorus capsularisOryza sativa32.4344.4183.23310forward
CNT30702815Corchorus capsularisQuercus lobata17.1544.5788.41164forward
CNT30618173Corchorus capsularisSesamum indicum29.7135.8187.32284forward
CNT30712730Corchorus capsularisGlycine max38.672.0786.99369forward
CNT30136973Corchorus capsularisLolium perenne25.157.1489.17240forward
CNT3041219Corchorus capsularisChlamydomonas reinhardtii20.534.3983.67196forward
CNT30208739Corchorus capsularisHelianthus annuus22.2853.9288.73213forward
CNT30721298Corchorus capsularisTriticum spelta13.0838.4691.2125forward
CNT30482824Corchorus capsularisChara braunii30.8638.7680.68295forward
CNT30119652Corchorus capsularisCitrus clementina19.2524.1584.24184forward
CNT30575848Corchorus capsularisOryza barthii32.6434.7183.01312forward
CNT30593783Corchorus capsularisEragrostis curvula19.5635.4282.35187forward

Expression of CNT30727924

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVRLVLMVATAALTSLGTTSPRYIKQQAMYLPWRGSHLAIIDEGSKALLV*

>peptide 2 (40 aa)
GFSEGTIPKRIIGTSTSQFSNKKVIRGQGWVLKNWGQNMP*

>peptide 3 (34 aa)
MRENTSATLVELEIMQTALWTLARSPPGTTVGGW*

Sequence

>CNT30727924
TGGGATTTTCTGAGGGCACCATCCCTAAACGTATTATTGGTACTAGTACTTCGCAATTCTCAAACAAAAAGGTAATTCGAGGTCAGGGCTGGGTTTTAAA
GAACTGGGGCCAAAATATGCCATGATCATTTGAAGAAGCCAAGGCCCACAAACGCATATTGGAATCACAAATACAAATTGTCAACAATTAAACGATAGCA
TAGAATACCAAAAGAGTATTTCTTTAACAGAAGTCTTCAACAAGCTTTGAAACGGAGATAAGAATCAAAGCTGACAACATACAGAAGCAAACATAAAAAC
GAAAGGGACAACAATTCATCGGCTCACAAACTGCAAGAAGCCCTCAAGTCAAACATATATCTAGTACTCCTCTGCAGCAAGATCCTCACGAGCCTCAGAG
AATTCACCTTCTTCCATACCCTCACCCACGTACCAGTGAACAAAGGCACGCTTGCAGTACATAAGATCAAACTTGTGGTCAATGCGGGAGAACACCTCAG
CCACACTGGTAGAGTTGGAAATCATGCAAACAGCCCTTTGGACCTTGGCGAGGTCACCACCAGGAACAACAGTGGGTGGCTGGTAGTTGATACCACACTT
GAATCCAGTTGGGCACCAGTCAACAAATTGGATGGTACGTTTGGTCTTGATGGTGGCAACTGCAGCATTGACATCCTTAGGCACAACATCACCACGGTAC
ATCAAACAGCAAGCCATGTACTTGCCATGGCGAGGATCACACTTAGCCATCATAGATGAAGGCTCAAAGGCACTGTTGGTGTAGGTGGGTCGCTCAATGT
CAAGAGAACGCCTGCAGATGTCATAGATAGCCTCATTGTCGAGGAGAACAGCCACATCAGTGTGTTCCAAAAGGGAGTGAGTTGAGAGAACACTATTGTA
GGGCTCAACAACAGAGGTGGAGACCTGGGGAGAGGGGTAGACAGTGAAACCCAACT