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Detailed information on CNT30194493

BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 9e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691021	Secale cereale	Oryza sativa	25	50.74	88.37	172	forward
CNT30671343	Secale cereale	Setaria viridis	24.85	29.74	90.64	171	forward
CNT30702610	Secale cereale	Quercus lobata	18.6	24.52	82.03	128	forward
CNT30710775	Secale cereale	Glycine max	22.09	27.05	81.58	152	forward
CNT30301234	Secale cereale	Triticum aestivum	19.77	41.85	88.24	136	forward
CNT30442485	Secale cereale	Aegilops tauschii	32.27	25.61	98.65	222	forward
CNT30254078	Secale cereale	Avena sativa	32.27	35.18	91.89	222	forward
CNT30140197	Secale cereale	Lolium perenne	30.38	26.16	85.17	209	forward
CNT3010238	Secale cereale	Zea mays	23.11	16.09	91.82	159	forward
CNT30687059	Secale cereale	Triticum urartu	32.27	31.85	99.1	222	forward
CNT30722480	Secale cereale	Triticum spelta	25	30.34	84.88	172	forward
CNT30100563	Secale cereale	Oryza rufipogon	30.67	22.59	88.63	211	forward

Expression of CNT30194493

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MTTCLEQVPLREPTFSMFLTTSMPSTTSPKTTCLPSSQLQGTVQMKNWEPLVLGPALAMERIPGLGFEIGIAVWGLGFP*

>peptide 2 (37 aa)
DNNENNTTRFLTHWSQEHQTKYEWDKQIMRTASTNYG*

Sequence

>CNT30194493
TGGATAACAACGAAAATAATACTACACGATTTCTAACGCATTGGAGTCAGGAGCACCAGACAAAGTATGAATGGGACAAACAGATAATGAGGACAGCGAG
CACAAATTATGGATAATTCATAGTCTCATTCAAACGGTAAGATAGCAGCAGACACAGGAAGGCGGCCGGACGCGGATCCAGCAGCCTACAGAGCCCACCT
AAAACCCTCCTAAACCAACCACGGAGATCTCATCGGACGGACAAGGGGAAGACACGACGACACACGCAATTCTTATTTAGATCGACGACACGGGACACGG
GACGACGACGACGGGCGACCGGCGGACGGACGGAGGGATCTAGAGCTGGCCGCAGTCGGCGATGACGACCTGCTTGGAGCAGGTGCCGCTGCGGGAGCCC
ACCTTCTCGATGTTCTTGACGACGTCCATGCCCTCGACGACCTCGCCGAAGACCACGTGCTTGCCGTCGAGCCAATTGCAGGGCACGGTGCAGATGAAGA
ACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGGATCCCGGGCTTGGGTTTTGAGATTGGGATTGCTGTGTGGGGATTGGGATTTCCTTG
AGCTTCGGGCTCTGTGATCTGCCAAGGGGAGACCGGGCCCGGTTAAATAGGCGGCGAGGCCCGGCGCGGGCCGTCCGATCGGGACGCG