Detailed information on CNT30364838


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 8e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043301Sorghum bicolorPrunus dulcis20.1614.1785.15101forward
CNT30167183Sorghum bicolorPistacia vera25.5520.4582.03128forward
CNT30638631Sorghum bicolorCapsicum annuum27.1518.0482.35136forward
CNT30441614Sorghum bicolorAegilops tauschii39.3223.8887.31197forward
CNT30722480Sorghum bicolorTriticum spelta22.7520.1184.21114forward
CNT30155236Sorghum bicolorPrunus persica20.1611.3785.15101forward
CNT30100563Sorghum bicolorOryza rufipogon22.5512.188.5113forward
CNT30575409Sorghum bicolorOryza barthii22.5518.287.61113forward

Expression of CNT30364838

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDSPPVPLPRVKSPPWHMNCGMTRWKVEPL*

>peptide 2 (42 aa)
MINKRLNSDHHSDHHHLIQIEANRKRDGTQAEWTRLRSRCPG*

Sequence

>CNT30364838
GAAGTAAGCAGAGGCGCCATGGGATTCGGAGATCCACACCTACACCGCTAGATTAAACCGCGAGCGACACAGACAGACGCACATGATAAATAAACGACTC
AACTCAGACCACCACTCAGATCACCATCATCTTATTCAGATCGAAGCAAACCGGAAACGGGACGGGACGCAGGCGGAATGGACTCGCCTCCGGTCCCGTT
GCCCCGGGTGAAGTCGCCGCCCTGGCACATGAACTGCGGGATGACGCGGTGGAAGGTGGAGCCCTTGTAGTGGAGCGGCTTCCCGGACTTCCCCACGCCC
TTCTCGCCCGTGCACAGCGCGCGGAAGTTCTCGGCCGTCTTGGGCACCTCGTTCGCGTACAGCTCCATCACGATCCGCCCCGCCGCCGCGCCGCCGACCG
TCATGTCGAAGAAGACGCGCGGGTTCGCCATCGGGATCCGAAGGTAGCTAGGGTTTGGGAGAGAGGGTTTTTGGTTGGGGGGAAATTTTTCCTTCGGCTG
T