Detailed information on CNT3069553


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-148

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512802Quercus suberJuglans regia80.6479.5486.11583forward
CNT30701196Quercus suberQuercus lobata99.5981.9198.06720forward
CNT30275114Quercus suberChenopodium quinoa87.5590.4384.04633forward
CNT30381217Quercus suberManihot esculenta87.8369.7885.51635forward
CNT30525259Quercus suberPhaseolus vulgaris82.9935.6984.67600forward
CNT30629001Quercus suberVigna unguiculata86.3150.9883.81624forward
CNT3045767Quercus suberPrunus dulcis87.8343.2685.2635forward
CNT3086449Quercus suberVigna radiata83.9638.6483.03607forward
CNT30145430Quercus suberMedicago truncatula81.1933.4383.13587forward
CNT3061706Quercus suberArabidopsis lyrata8768.6782.51629forward
CNT30713920Quercus suberMalus domestica golden72.296.1383.91522forward
CNT30153909Quercus suberPrunus persica85.6275.2184.65619forward
CNT3032819Quercus suberTheobroma cacao83.9699.8483.36607forward

Expression of CNT3069553

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVKVLTKICIPPLSRSTRWRVDSFWIL*

>peptide 2 (40 aa)
MVSELSTSKVMVLPVKVFTKICIPPRSRSTRWRVDSFWML*

Sequence

>CNT3069553
GTGAACAGATAGACAAAAACCAAAAAGCACCAACATAGAAATACTCGAGACAATGGACTCGAACACAGAATCACAACCATCCAAGCTTAGAAACCACCAC
GGAGGCGAAGGACAAGGTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTG
CTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCTGTCAAG
GTCTTAACAAAAATTTGCATTCCACCTCTAAGCCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTGTAGTCGGCTAGCGTCCGACCATCTTCAA
GCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTGGCTTTGACATTATCAATGGTGTCGGAGCTCTCAAC
TTCCAAAGTAATGGTTTTACCGGTCAAGGTCTTCACAAAAATTTGCATTCCACCTCGAAGCCGGAGCACAAGGTGGAGGGTGGATTCCTTTTGGATGTTG
TAGTCTGCGAGGGTGCGACCATCTTCGAGCTGCTTTCCGGCAAAGATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTGA
CATTGTCGATGGTGTCTGAGCTT