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Detailed information on CNT30713920


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-125

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Malus domestica goldenCorylus avellana98.1669.5884.99533forward
CNT30701458Malus domestica goldenQuercus lobata96.553.5285.31524forward
CNT3069553Malus domestica goldenQuercus suber96.1372.283.91522forward
CNT30153746Malus domestica goldenPrunus persica75.1444.2593.14408forward
CNT30706355Malus domestica goldenPrunus avium10035.3392.82543forward
CNT30120117Malus domestica goldenCitrus clementina94.8475.8584.27515forward

Expression of CNT30713920

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGMPSLSWIFALTLSMVSELSTSKVIVLPVRVLTKICIPPRRRRTKWRVDSFCML*

>peptide 2 (59 aa)
KINLCWSGGMPSLSWILAFTLSIVSELSTSRVMVFPVKVFTKICIPPRNRSTKWRVDSF*

>peptide 3 (31 aa)
RSTFVGLGECPPCPGFWPSHYQLYQNFQLLG*

>peptide 4 (30 aa)
KDQPLLVWGNALLVLDFGLHIINCIRTFNF*

Sequence

>CNT30713920
AAAGATCAACCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACTTCTAGGGTAATG
GTTTTTCCAGTCAAGGTCTTCACAAAGATTTGCATACCACCACGCAATCGGAGCACCAAGTGGAGAGTCGATTCCTTTTGAATGTTATAATCAGCAAGTG
TGCGACCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGGATCTTTGCCTTGACATTATCAATGGT
ATCCGAGCTTTCAACTTCCAAGGTGATTGTCTTACCGGTAAGGGTCTTGACAAAGATTTGCATACCACCACGAAGACGGAGAACCAAGTGGAGGGTGGAC
TCCTTCTGTATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTT
GGATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCAAC