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Detailed information on CNT3061706


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Arabidopsis lyrataCorylus avellana69.2182.7783.6634forward
CNT30547563Arabidopsis lyrataIpomoea triloba71.2994.6482.7653forward
CNT30378432Arabidopsis lyrataArabidopsis thaliana84.83100.1389.19777forward
CNT3069553Arabidopsis lyrataQuercus suber68.678782.51629forward
CNT30406246Arabidopsis lyrataBeta vulgaris69.2194.4983.12634forward
CNT30538027Arabidopsis lyrataBrassica napus72.3834.9788.39663forward
CNT30238962Arabidopsis lyrataBrassica oleracea72.8234.5190.1667forward
CNT3079055Arabidopsis lyrataBrassica juncea72.2761.1389.12662forward
CNT30605497Arabidopsis lyrataGossypium raimondii68.7883.1183.65630forward
CNT30214147Arabidopsis lyrataHelianthus annuus70.9680.8583.85650forward
CNT30153579Arabidopsis lyrataPrunus persica70.9641.0483.08650forward
CNT30572860Arabidopsis lyrataVitis vinifera68.0167.583.31623forward
CNT30595409Arabidopsis lyrataEragrostis curvula68.6769.2783.78629forward

Expression of CNT3061706

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MEGRLLLDVVICKSPTIFELFPSKDESLLVWWDPFLVLNLCLDVIDCV*

>peptide 2 (49 aa)
MRHKEPLIIRSQKLRSFHHEDEEPSEESTPSGCCNLQESDHPQAVSQRR*

Sequence

>CNT3061706
CTCTATTCCATGCTTCGAATATATTGGACACAAAGGGTATAATAATTTCTAGAAAGAGGAATGTTTAACATGCACTTGGATTATTATTAAAAGTTGAAAC
AGCAACAAAAGGTTCATAAGAAAATAGAAAATTGAGAACATAGATAGGTAAAAGGTTTTCCCACAGACGGAAACTTAATCAGGTGAAGAAGATCTCACCT
CCCAAGTGTATGAGACACAAAGAACCACTTATCATCAGATCACAAAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTT
CTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATC
TTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTACCTGTCAAAGTCTTTACAAAGATTTGCATTCCACCACGCAGAC
GCAACACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCTGCAAGAGTCCGACCATCTTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGCTGGTC
TGGTGGGATCCCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCAGTTAGGGTCTTC
ACAAAGATCTGCATACCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCCAGTGTACGGCCATCTTCTAGCTGCT
TACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAG
AGTGATGGTCTTACCA