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Detailed information on CNT30381217


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-152

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701196Manihot esculentaQuercus lobata75.4978.1685.74687forward
CNT3069553Manihot esculentaQuercus suber69.7887.8385.51635forward

Expression of CNT30381217

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVRVFTKICIPPRRRSTKWRVDSFWIL*

>peptide 2 (30 aa)
MVFPVRVFTKICIPPRRRSTRWRVDSFWIL*

Sequence

>CNT30381217
TGAATCGTAATTCCAGAATATTATATTGGCAAGTCAAGCCAACTTTATTAACCCTTGAAGTAAAAGTACCAATGACCTTATAGCGGCCATTTCAAAAGCT
TTAGTAAAGTACTCGCAACCATTCCAAAATAACAAGTCTTGGAGGTTTAAAAACTTATTTAAAGCCATTAAGGCAAGGCATTACTAGTAGCTATTAAGAA
CATACTAGACACAACCAAAACTCAGAAACCACCGCGAAGGCGGAGGACAAGGTGCAAGGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTTCCA
TCCTCAAGCTGCTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCAATAGTATCCGAAC
TCTCTACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCATTCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCTTTCTG
GATATTGTAGTCTGCAAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGAATTTTG
GCCTTGACATTGTCAATCGTGTCCGAACTCTCTACCTCCAAAGTAATGGTCTTCCCTGTAAGAGTCTTCACAAAAATCTGCATTCCACCACGAAGGCGGA
GCACCAGGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGCAAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGG
TGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCCAGGGTGATTGTCTTTCCGGTTAGGGTTTTCACG
AAGATCTGCA