Detailed information on CNT3032819


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 2e-105

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547563Theobroma cacaoIpomoea triloba98.8587.184.86601forward
CNT3069553Theobroma cacaoQuercus suber99.8483.9683.36607forward
CNT30609009Theobroma cacaoGossypium raimondii10063.7390.3608forward
CNT3021969Theobroma cacaoPopulus trichocarpa99.3475.3185.26604forward

Expression of CNT3032819

Peptides detected in this lncRNA

>peptide 1 (58 aa)
LETTTEAKDKMKGGLLLDIVVSQSATILQLLASKDQPLLVWRNPLLVLNLCFHIVNRV*

>peptide 2 (30 aa)
MVFPVKVFTNICIPPLRRKTKCRVDSFWML*

>peptide 3 (64 aa)
RNHHGGEGQDEGWTPSGYCSQPECDHPPTACQQRSTSAGLEESPPCPESLLSHCQSCLSSQPPG*

>peptide 4 (30 aa)
MVFPVNVLTNICIPPLRRKTKCRVDSFWML*

Sequence

>CNT3032819
TTAGAAACCACCACGGAGGCGAAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCA
AAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGG
TTTTCCCAGTCAAGGTCTTCACAAATATCTGCATCCCTCCTCTCAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGT
CCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTGGCTTTAACGTTGTCAATTGTG
TCAGAGCTCTCCACCTCCAAAGGTGATGGTTTTCCCAGTCAATGTCTTGACAAATATCTGCATCCCTCCTCTAAGGCGCAAGACCAAATGCAGGGTTGAC
TCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTATCTT
GGATCTTG