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Detailed information on CNT30275114


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-160

BLAST vs NONCODE:
NONTPRT002153, E-value = 3e-119

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315749Chenopodium quinoaCorylus avellana98.4342.4386.5689forward
CNT30546269Chenopodium quinoaIpomoea triloba94.4373.6184.27661forward
CNT30500332Chenopodium quinoaCoffea canephora94.4385.0785.63661forward
CNT30727318Chenopodium quinoaCorchorus capsularis99.2960.9184.89695forward
CNT3069553Chenopodium quinoaQuercus suber90.4387.5584.04633forward
CNT30380449Chenopodium quinoaManihot esculenta97.7169.8783.92684forward
CNT30406245Chenopodium quinoaBeta vulgaris91.5798.3184.09641forward
CNT30506305Chenopodium quinoaNicotiana attenuata98.7173.2885.53691forward
CNT30588982Chenopodium quinoaMusa acuminata8972.6184.59623forward
CNT3089456Chenopodium quinoaVigna radiata96.4345.3684.89675forward
CNT30171036Chenopodium quinoaTrifolium pratense99.1444.3284.73694forward
CNT30609150Chenopodium quinoaGossypium raimondii97.7164.2984.06684forward
CNT30153579Chenopodium quinoaPrunus persica98.4343.583.89689forward
CNT30120554Chenopodium quinoaCitrus clementina97.8671.2183.94685forward
CNT30111740Chenopodium quinoaFicus carica97.5758.7884.48683forward
CNT30723701Chenopodium quinoaLupinus angustifolius98.7139.3585.09691forward

Expression of CNT30275114

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSRVIVFPVRVLTKICIPPLRRSTRWRVDSF*

>peptide 2 (30 aa)
MVLPVKVFTKICIPPLNRSTKWRVDSFWML*

>peptide 3 (92 aa)
TKSLETTTETEDKVKGRLLLNVVISKGTPILELLTSKDQPLLVWGDPLLVLDLSLHIINCIRALNLQSDGLASQGLHKNLHSSPQSEHQVES*

Sequence

>CNT30275114
ACCAAGAGCTTAGAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGC
TTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATTGTATCCGAGCTCTCAACCTCCA
GAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATTCCTCCCCTCAATCGGAGCACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTC
GGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTGACGTTG
TCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCATTCCTCCCCTGAGACGGAGCACAAGGTGGA
GAGTTGACTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCTTC
CTTGTCTTGGATCTTAGTCTTGACATTGTCAATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTCACGAAGATTTGCATC