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Detailed information on CNT30685285


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 9e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Triticum urartuOryza sativa12.8452.5187.02262forward
CNT30523972Triticum urartuSetaria italica7.7540.8393.67158forward
CNT30295392Triticum urartuTriticum aestivum6.2321.4585.83127forward
CNT30255788Triticum urartuAvena sativa10.5444.9885.58215forward
CNT30663631Triticum urartuTriticum dicoccoides9.2242.2589.89188forward
CNT30136525Triticum urartuLolium perenne7.8427.4485.62160forward
CNT306909Triticum urartuZea mays4.5635.584.9593forward
CNT30341811Triticum urartuEragrostis tef30.6942.4481.31626forward
CNT30365453Triticum urartuSorghum bicolor4.9538.1188.12101forward
CNT30371426Triticum urartuOryza glumipatula12.3526.7590.08252reverse complement
CNT30578431Triticum urartuOryza barthii15.7825.3792.86322forward
CNT30117133Triticum urartuOryza nivara5.5936.1993.86114forward
CNT30592989Triticum urartuEragrostis curvula7.0171.1488.81143reverse complement

Expression of CNT30685285

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MFHMIKLHVSERDYPTTFCSWTWDHKHIVPICTFSEASPNLRPWRAA*

>peptide 2 (42 aa)
MRVIMATMKARTRSTARRRRQPFRRWSSPWLPQSLPMASWLL*

>peptide 3 (39 aa)
MWMPAYHWQLAHIGIKETKRFPQTNICVPNVSYDQTPCE*

>peptide 4 (36 aa)
MVYKPRRNLPLAGDWTAGASCDKTRPLRGSKWSSGT*

>peptide 5 (32 aa)
MFPSLPKASESLSFRRNMGHTHKEATISASVV*

>peptide 6 (31 aa)
MSSYSEWFRGVVEGGGKEEVWCGGCGVWEAE*

>peptide 7 (30 aa)
METSERKYSPLQERWRLQVLFCNLFRKSHV*

>peptide 8 (30 aa)
MGSQTHSPHLYFLRSFTKSQTMESCLGSGC*

>peptide 9 (49 aa)
MVNHAPLLYTYNPTYNSVIIIATDLCLCGHYGIQAKKKPTSRRRLDRRS*

Sequence

>CNT30685285
TAGCTAGCACGAGAATACAACCGGAGTAAGCAACCAAAAGGAAAGTGGGAGTGATCATACATTGCACATGCATGCTTAGCTTCGAATCCATCTTTCTCTG
TGCCCTTCCATTTATCTTCTGAAGCAATACTCGTACAAAGGTTTTCAGGCATCTCGGATCGAATCATCTCCACTGTCATCTCCCATCTTTCTGAAGGCAT
ATATACCATTTTAAATAATATGCAGTCAGTGCTGCATTAATTTGCTGCCGATAGGCACATGTTTCCTTCTCTCCCCAAAGCAAGTGAATCCTTATCATTT
CGACGGAACATGGGCCACACCCACAAAGAAGCCACTATCTCAGCATCTGTCGTGTAAAGCCATTCATGGAAACTTCAGAAAGAAAATACAGTCCTTTACA
AGAAAGATGGCGACTCCAAGTACTATTCTGCAATCTTTTCAGAAAGTCGCATGTGTAAATTCAGTTCCATAACCTGATGTAAACCTACATACCGACTGTA
ATTGTTCGACTGTTAAACTACTGATGACTAGTAACTGATTGCAAAGTCAAAGTTCATACAACAATTTTTTTACCAAGAACATATGCTTCCACATGTGGAT
GCCAGCGTATCATTGGCAATTGGCACATATAGGGATTAAAGAAACAAAACGGTTTCCGCAAACTAACATTTGTGTTCCCAATGTTTCATATGATCAAACT
CCATGTGAGTGAGAGGGATTATCCAACTACCTTTTGTTCTTGGACATGGGATCACAAACACATAGTCCCCATTTGTACTTTCTCCGAAGCTTCACCAAAT
CTCAGACCATGGAGAGCTGCCTAGGATCTGGTTGTTGACACCAAACCACCAAACAGAACTCCAAAATTCTAGTAGTACAGTACTACTACAGTTATGAAAC
AACTCATGTGCATTGCCCCATGATTATCAATGGGAAGTAAATGGTAAACCATGCACCCCTGCTTTACACTTATAACCCCACATATAATAGTGTAATAATT
ATTGCCACCGATCTGTGCCTCTGCGGTCACTATGGTATACAAGCCAAGAAGAAACCTACCTCTCGCCGGCGACTGGACCGCCGGAGCTAGCTGTGATAAA
ACTAGACCTCTACGTGGCAGTAAGTGGTCGTCTGGAACTTGAACCCGCTAGCCCCTGGTGCGCCGTTGCCGCCGCTGGTGACGAGGAAGGCCGGGCAGGT
GACGAAGAGGTGGTAGTGGCCAGAGATCCAGCTGCCGACCTTCCACCTGACGCGGCCGTCGATCTTGACCTGGAGGATGAGGTAGCCAGCCTGGCAGTCC
TGGGAGATGGCGCTGGCGAGGTACGGCGCGAAGGGCACGTTGGGCCCGTCGAGCACTGGTGACCATACGTCTACGTCGCCGTGGCCCTGGTAGACCGCCG
GGAGCGAGGCGGCGACGGTGATCTGCTGGTACTTGTAGGAGGCGTAGACGTCGAGGCGGTCGTAGTAGACACCGACGCGGTCGTTGGGGTTGCGGGAGGC
TACGGTGACCTGGAGGGAGGTGGAAAGGAGGCCCGAGGAGTTGGAGAGGTTGAGCTGCCGGAGGGAGGCGTCCTGGAGGAAAAAGCGCGGGTGGGTGGGG
CGGAGCACCAAGTAGACGATGAGGGTGATTATGGCGACGATGAAGGCCAGGACCAGGAGCACGGCCAGGAGGCGCCGGCAGCCGTTCCGGAGGTGGTCGT
CGCCGTGGTTGCCGCAGTCCTTGCCCATGGCTAGCTGGCTGCTTTGATCAGTTGATTCGCGTATGATTTGGTTGTGTCTCCGATGAGCTCTTATTCTGAG
TGGTTCAGAGGTGTAGTGGAAGGAGGAGGAAAGGAGGAGGTGTGGTGCGGGGGCTGTGGTGTTTGGGAAGCAGAGTAGATTGAGCTTACGGGTCACCCCA
TTAATAGGCTCTCTCCTCTGAATCCCAGGGTCACGGTGGGGCCTGCCCAGCGACGTGCCTACTAATTCTAGTTAGACGACCATAACGTAAACCTACACTT
TATTTTTTTTCTCAGCTTTTTTTCTTTCTCGATGAACTTC