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Detailed information on CNT30255788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Avena sativaOryza sativa25.9424.8591.13124forward
CNT30523972Avena sativaSetaria italica17.9922.2287.2186forward
CNT30295392Avena sativaTriticum aestivum26.5721.4588.19127forward
CNT30663631Avena sativaTriticum dicoccoides40.5943.689.18194forward
CNT30461908Avena sativaSaccharum spontaneum25.19.780.83120forward
CNT30136525Avena sativaLolium perenne33.2627.2793.08159forward
CNT3017612Avena sativaZea mays21.3424.5884.31102forward
CNT30685285Avena sativaTriticum urartu44.9810.5485.58215forward
CNT30341811Avena sativaEragrostis tef46.8615.1986.16224forward
CNT30365453Avena sativaSorghum bicolor26.5747.9285.83127forward
CNT30578431Avena sativaOryza barthii63.1823.886.75302forward
CNT30117133Avena sativaOryza nivara23.2235.2490.09111forward

Expression of CNT30255788

Peptides detected in this lncRNA

>peptide 1 (95 aa)
RVGEVRREGDAGAAQHRGPHLHVTVALVHRRERRGHRDLLVLVGRVHVQAVVVDAHAVVRVAGRDGHLEGGGEDAGGGGCVGGRSAGAWGGGPGR*

>peptide 2 (79 aa)
MVTWRVVERMPAAADALEEEARVRGAEDQVDDQGDEGHHQRQEEEEGQEAPARLTDVVLAVVAAVLAHGARAAFSLSCF*

>peptide 3 (42 aa)
ESARYGAKGTPGPLSTGDHTSTSPWPWYTDGSDEATVICWYL*

>peptide 4 (37 aa)
ASRRGTARRGRRGRSAPGTTPPRHRGPGTPTGATRPP*

Sequence

>CNT30255788
GCGAGTCGGCGAGGTACGGCGCGAAGGGGACGCCGGGGCCGCTCAGCACCGGGGACCACACCTCCACGTCACCGTGGCCCTGGTACACCGACGGGAGCGA
CGAGGCCACCGTGATCTGCTGGTACTTGTAGGACGCGTACACGTCCAGGCGGTCGTAGTAGACGCCCACGCGGTCGTTCGGGTTGCGGGACGCGATGGTC
ACCTGGAGGGTGGTGGAGAGGATGCCGGCGGCGGCGGATGCGTTGGAGGAAGAAGCGCGGGTGCGTGGGGCGGAGGACCAGGTAGATGATCAGGGCGATG
AAGGCCACCACCAGCGCCAGGAAGAAGAGGAAGGCCAGGAGGCGCCGGCACGCCTGACGGACGTTGTCCTCGCCGTGGTTGCCGCAGTCCTTGCCCATGG
CGCCCGAGCTGCTTTTTCCTTGTCCTGCTTTTAGGAGGACGCGTCTGAGAGCAGAGGAGCGAGAGGAGAAGGGAGGGG