Detailed information on CNT30523972


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Setaria italicaOryza sativa41.0931.8690.57159forward
CNT30295392Setaria italicaTriticum aestivum27.6518.0784.11107forward
CNT30255788Setaria italicaAvena sativa22.2217.9987.2186forward
CNT30663631Setaria italicaTriticum dicoccoides29.4625.6288.6114forward
CNT306909Setaria italicaZea mays14.4721.3789.2956forward
CNT30685285Setaria italicaTriticum urartu40.837.7593.67158forward
CNT30353455Setaria italicaEragrostis tef40.0521.2694.19155reverse complement
CNT30365453Setaria italicaSorghum bicolor23.7734.7286.9692forward
CNT30371426Setaria italicaOryza glumipatula44.4418.2690.12172reverse complement
CNT30578381Setaria italicaOryza barthii21.456.6696.3983forward
CNT30592989Setaria italicaEragrostis curvula28.6855.2292.79111reverse complement

Expression of CNT30523972

Peptides detected in this lncRNA

>peptide 1 (34 aa)
TWHVVVVWNLNPLAPGAPLPPLVTRKAGHVTKRW*

>peptide 2 (93 aa)
DVACGGGLELKSAGPRRAVAAVGDEEGRACDEEVVVSRDPAADLPPDAAVDLDLEDERDDGDEEGQEQEDGQEAPARAPEVVVAVVAAVLAHG*

>peptide 3 (52 aa)
MSAMMATRKARNRRMARRRRHERRRSSSPWLPQSLLMADALLFLVVGWNGGW*

Sequence

>CNT30523972
CGACGTGGCATGTGGTGGTGGTCTGGAACTTAAATCCGCTGGCCCCCGGCGCGCCGTTGCCGCCGTTGGTGACGAGGAAGGCCGGGCATGTGACGAAGAG
GTGGTAGTGTCCCGAGATCCAGCTGCCGACCTTCCACCTGACGCGGCCGTCGATCTTGACCTGGAGGATGAGCGCGATGATGGCGACGAGGAAGGCCAGG
AACAGGAGGATGGCCAGGAGGCGCCGGCACGAGCGCCGGAGGTCGTCGTCGCCGTGGTTGCCGCAGTCCTTGCTCATGGCTGACGCCTTGCTCTTCTTGG
TTGTTGGGTGGAATGGAGGATGGTGAGGGGCAGGGAACGAGGAAGAAGGGAGAGCAGAGCAGAGGAGGTGGGGTGTTGCAGTGTTTG