Detailed information on CNT30365453


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Sorghum bicolorOryza sativa35.8519.0488.4295forward
CNT30523972Sorghum bicolorSetaria italica34.7223.7786.9692forward
CNT30295392Sorghum bicolorTriticum aestivum43.0219.2688.6114forward
CNT30255788Sorghum bicolorAvena sativa47.9226.5785.83127forward
CNT30663631Sorghum bicolorTriticum dicoccoides41.8924.9487.39111forward
CNT30461908Sorghum bicolorSaccharum spontaneum22.264.7789.8359forward
CNT30136525Sorghum bicolorLolium perenne43.0219.5589.47114forward
CNT306909Sorghum bicolorZea mays38.8739.3191.26103forward
CNT30685285Sorghum bicolorTriticum urartu38.114.9588.12101forward
CNT30341811Sorghum bicolorEragrostis tef81.5114.6482.87216forward
CNT30595730Sorghum bicolorOryza meridionalis30.9410.8885.3782forward
CNT30371426Sorghum bicolorOryza glumipatula35.8510.0888.4295reverse complement
CNT30578282Sorghum bicolorOryza barthii68.6819.4284.07182forward
CNT30116075Sorghum bicolorOryza nivara22.265.8188.1459forward
CNT30592989Sorghum bicolorEragrostis curvula35.8547.2685.2695reverse complement

Expression of CNT30365453

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MRYPAAISLLNASARNGAKGTPGPDRTGDQTSTSPWPWYTCGSLDASVICWYL*

>peptide 2 (86 aa)
RAGDEDVVVPGDPAPDLPPDPAIDPDLQDEVPSCNILAQRVGEERREGDAGARQDRRPDVDVAVALVHLRQPGRQRDLLVLVEARVG

Sequence

>CNT30365453
GCCGGGCAGGTGACGAAGATGTGGTAGTGCCCGGAGACCCAGCTCCCGACCTTCCACCTGACCCTGCCATCGATCCTGACCTGCAAGATGAGGTACCCAG
CTGCAATATCCTTGCTCAACGCGTCGGCGAGGAACGGCGCGAAGGGGACGCCGGGGCCCGACAGGACCGGCGACCAGACGTCGACGTCGCCGTGGCCCTG
GTACACCTGCGGCAGCCTGGACGCCAGCGTGATCTGCTGGTACTTGTAGAAGCGCGGGTGGGTGG