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Detailed information on CNT30578431


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 3e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295392Oryza barthiiTriticum aestivum10.0121.4592.13127forward
CNT30255788Oryza barthiiAvena sativa23.863.1886.75302forward
CNT30663631Oryza barthiiTriticum dicoccoides14.7442.0294.12187forward
CNT30136525Oryza barthiiLolium perenne12.2926.7691.67156forward
CNT306909Oryza barthiiZea mays6.3830.9293.8381forward
CNT30685285Oryza barthiiTriticum urartu25.3715.7892.86322forward
CNT30341811Oryza barthiiEragrostis tef25.7722.1785.32327forward

Expression of CNT30578431

Peptides detected in this lncRNA

>peptide 1 (52 aa)
NLTFQVVPWIWLLPTNKHAYIIPKKPVDPTPLICMIKMSYHQHHSKKKCMTT*

>peptide 2 (54 aa)
MRAMMPTRMARTTRTVMNRRHPCRKSSSPCLPQSFPMMLLASWFLGGLFSSTLH*

Sequence

>CNT30578431
AATCTCACATTTCAAGTGGTGCCTTGGATCTGGTTGTTGCCAACAAACAAACATGCATACATAATTCCAAAAAAGCCAGTTGATCCAACACCTCTAATTT
GCATGATCAAAATGAGCTATCACCAACATCACTCCAAAAAGAAATGCATGACCACATGAAAAAAAGAGAGAGGTAGAATTAAAATAAAAATACAGAATTT
GACAAATAACTAAACATGCATTTCTCCTTAATTAAGACAAAAAAGGATTATTAACAATTAAGCTAATAATCAAGAGAGCATTATAATTAACCATACCATT
AATCCTACTTAAATTGCCTCTCCACCTCCTTTACATTTTGTAACCCACATAATAATTCATTATTACCACCATCATCTCTTTTTCACTATGGACACACAAG
AACACCACCACCTCCAAGAAATCAAACCTACCTCGCCGGCGACTAGCCGGAGATAGCAGATTCCGGCGGCGGCGGCGGGCACAGTAGTAGATCATAACAT
AACTAGCTTAGCTAGACCTCGACGTGGCAGTAGGTGGTAGTGGCCGGAGATCCAGCTGCCGACCTTCCACCGGACGCGGCCGTCGATCTTGACCTGGAGG
ATGAGGTAGCCCGCCTGGCAATCCTGCGAGATGGCGTCGGCGAGGTAGGGCGCGAAGGGGACGCTGGGGCCGGCGAGCACCGGCGACCAGACGTCGACGT
CGCCGTGGCCCTGGTACACCGGCGGGAGCGAGGCGGCGACGGTGATCTGCTGGTACTTGTAGGAGGCGTAGACGTCGAGGCGGTCGTAGTAGACGCCGAC
GCGGTCGTTGGGGTTGCGGGAGGCGACGGTGACCTGGATGGTGGTGGAGAGGACGCCGCCGGCGGTGGAGGAGGAGTTGGAGAGGTAGAAGCGAGGGTGG
GTGGGGCGGAGGACGAGGTAGACGATGAGGGCGATGATGCCGACGAGGATGGCGAGGACGACGAGGACGGTGATGAATCGCCGGCACCCCTGCCGGAAGT
CGTCGTCGCCGTGCTTGCCGCAATCCTTCCCCATGATGCTTCTAGCTTCTTGGTTTCTTGGTGGACTCTTCTCTTCTACTCTACACTAGTCTTTGCTTTG
GTTTGGTTTGGTTTTGCTTGTAATCCTTTGCTTAATTTGAGCTTAGTGAGATGAGATGAGTGGAGAGGAGAGAGAAGAGGAAAGGTGGTGGTGGTGTTAG
AGAGAGAGAGGGGGGAGTGGGGTAGATGAAGAAGATGATGGGGGAGGTGTAGAGATTATGTGGGGAAGA