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Detailed information on CNT30371426


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 5e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Oryza glumipatulaOryza sativa22.0841.6899.52208reverse complement
CNT30677272Oryza glumipatulaSetaria viridis5.121.1591.6748reverse complement
CNT30523972Oryza glumipatulaSetaria italica18.2644.4490.12172reverse complement
CNT306909Oryza glumipatulaZea mays9.8735.586.0293reverse complement
CNT30685285Oryza glumipatulaTriticum urartu26.7512.3590.08252reverse complement
CNT30353455Oryza glumipatulaEragrostis tef18.7924.2890.96177forward
CNT30365453Oryza glumipatulaSorghum bicolor10.0835.8588.4295reverse complement
CNT30578381Oryza glumipatulaOryza barthii77.7158.7596.58732reverse complement
CNT30592989Oryza glumipatulaEragrostis curvula15.0770.6588.03142forward

Expression of CNT30371426

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQIRGVGSTGFFGIMYACLFVGNNQIQGTT*

>peptide 2 (38 aa)
MVNYNALLIISLIVNNPFFVLIKEKCMFSYLSNSVFLF*

>peptide 3 (83 aa)
LAGPSVPFAPYLADAISQDCQAGYLILQVKIDGRVRWKVGSWISGHYHLFVTCPAFLVTAGGNGSPGASGFRFQTTTYCHVEV*

>peptide 4 (54 aa)
MIYYCAHRRRRNLLSPASRRRGRFDFLEVVVFLCVHSEKEMMVVIMNYYVGYKM*

>peptide 5 (89 aa)
RRPQRPLRALPRRRHLAGLPGGLPHPPGQDRRPRPVEGRQLDLRPLPPLRHLPGLPRHRRRQWLPRRQRLQVPDHHLLPRRGLAKLVML*

>peptide 6 (84 aa)
SPAPASPSRPTSPTPSRRIARRATSSSRSRSTAASGGRSAAGSPATTTSSSPARPSSSPPAAMAPPAPAASGSRPPPTATSRSS*

Sequence

>CNT30371426
CTCGCCGGCCCCAGCGTCCCCTTCGCGCCCTACCTCGCCGACGCCATCTCGCAGGATTGCCAGGCGGGCTACCTCATCCTCCAGGTCAAGATCGACGGCC
GCGTCCGGTGGAAGGTCGGCAGCTGGATCTCCGGCCACTACCACCTCTTCGTCACCTGCCCGGCCTTCCTCGTCACCGCCGGCGGCAATGGCTCCCCCGG
CGCCAGCGGCTTCAGGTTCCAGACCACCACCTACTGCCACGTCGAGGTCTAGCTAAGCTAGTTATGTTATGATCTACTACTGTGCCCACCGCCGCCGCCG
GAATCTGCTATCTCCGGCTAGTCGCCGGCGAGGTAGGTTTGATTTCTTGGAGGTGGTGGTGTTCTTGTGTGTCCATAGTGAAAAAGAGATGATGGTGGTA
ATAATGAATTATTATGTGGGTTACAAAATGTAAAGGAGGTGGAGAGGCAATTTAAGTAGGATTAATGGTATGGTTAATTATAATGCTCTCTTGATTATTA
GCTTAATTGTTAATAATCCTTTTTTTGTCTTAATTAAGGAGAAATGCATGTTTAGTTATTTGTCAAATTCTGTATTTTTATTTTAATTCTACCTCTCTCT
TTTTTTCATGTGGTCATGCATTTCTTTTTGGAGTGATGTTGGTGATAGCTCATTTTGATCATGCAAATTAGGGGTGTTGGATCAACTGGCTTTTTTGGAA
TTATGTATGCATGTTTGTTTGTTGGCAACAACCAGATCCAAGGCACCACTTGAAATGTGAGATTTGGTGAAGGGAAAGTACACTTTGGACTGTGTGTTTT
GTGTGTTTGTGATCCCAATTAAGTCCAAGCTGTAGTTGCTTAGTCTCACTCTCTGGGGTCTTCACATGCATGGACCAACTTGTTTAATTCCATCTCAAGA
AACAAGTGTTACTAACATGTGGCAACCATTTTATATTATTTA