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Detailed information on CNT30663631


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Triticum dicoccoidesOryza sativa21.819.4410097forward
CNT30523972Triticum dicoccoidesSetaria italica25.6229.4688.6114forward
CNT30318404Triticum dicoccoidesCorylus avellana21.820.7383.5197forward
CNT30295392Triticum dicoccoidesTriticum aestivum26.7420.199.16119forward
CNT30255788Triticum dicoccoidesAvena sativa43.640.5989.18194forward
CNT30136525Triticum dicoccoidesLolium perenne32.8125.0493.84146forward
CNT306909Triticum dicoccoidesZea mays15.7326.7287.1470forward
CNT30685285Triticum dicoccoidesTriticum urartu42.259.2289.89188forward
CNT30341811Triticum dicoccoidesEragrostis tef46.2913.9786.41206forward
CNT30365453Triticum dicoccoidesSorghum bicolor24.9441.8987.39111forward
CNT30369597Triticum dicoccoidesOryza glumipatula11.4620.6594.1251forward
CNT30578431Triticum dicoccoidesOryza barthii42.0214.7494.12187forward
CNT30117133Triticum dicoccoidesOryza nivara24.4934.696.33109forward

Expression of CNT30663631

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RRGRSGRRAPGTTPRRRRGPGTPAGARRPA*

>peptide 2 (77 aa)
EGDVRAGEHRGPHLDVAVALVHRRERGGQRDLLVLVGGVDVEAVVVDADAVVGVAGGDGDLEHGGEHARRGGGRGRR*

>peptide 3 (36 aa)
AKGTFGPESTGDHTSTSPWPWYTGGSAEASVICWYL*

>peptide 4 (70 aa)
MRAMTATSRARKKRKARKRRHVRRMSSSPWLPQSLLMASELACFRTRVGEERRGEERRAESKKRGGVWLKD

Sequence

>CNT30663631
GCGAAGGGGACGTTCGGGCCGGAGAGCACCGGGGACCACACCTCGACGTCGCCGTGGCCCTGGTACACCGGCGGGAGCGCGGAGGCCAGCGTGATCTGCT
GGTACTTGTAGGAGGCGTAGACGTCGAGGCGGTCGTAGTAGACGCCGACGCGGTCGTTGGGGTTGCGGGAGGCGACGGTGACCTGGAGCACGGTGGAGAG
CACGCCCGCCGCGGCGGAGGACGAGGTAGACGATGAGGGCGATGACGGCCACCAGCAGGGCCAGGAAGAAGAGGAAGGCCAGGAAGCGCCGGCACGTGCG
CCGGATGTCGTCCTCGCCGTGGTTGCCGCAGTCCTTGCTCATGGCGTCCGAGCTTGCTTGCTTTAGGACGCGTGTGGGAGAGGAGAGAAGAGGAGAGGAG
AGGAGAGCAGAGAGCAAGAAGAGGGGCGGTGTCTGGTTGAAAGAC