« Back to Triticum aestivum search


Detailed information on CNT30295392


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Triticum aestivumOryza sativa17.420.6485.44103forward
CNT30523972Triticum aestivumSetaria italica18.0727.6584.11107forward
CNT30255788Triticum aestivumAvena sativa21.4526.5788.19127forward
CNT30663631Triticum aestivumTriticum dicoccoides20.126.7499.16119forward
CNT30136525Triticum aestivumLolium perenne21.4521.7892.91127forward
CNT306909Triticum aestivumZea mays12.6728.6389.3375forward
CNT30685285Triticum aestivumTriticum urartu21.456.2385.83127forward
CNT30341811Triticum aestivumEragrostis tef21.458.6186.61127forward
CNT30365453Triticum aestivumSorghum bicolor19.2643.0288.6114forward
CNT30578431Triticum aestivumOryza barthii21.4510.0192.13127forward

Expression of CNT30295392

Peptides detected in this lncRNA

>peptide 1 (43 aa)
TKQLVTPALTIFFNSIVTTGLYILTIKRGINTSPTVKHEQNTI*

>peptide 2 (62 aa)
MYHPLAFSLDDPSWRRARARATRKKPTSSPSTEQRRKRKKKKQSAYGSAARPRRGSRWRSGT*

Sequence

>CNT30295392
AACAAAACAACTTGTAACCCCAGCATTAACCATTTTCTTTAATTCCATCGTAACAACAGGTTTATATATATTGACAATTAAACGCGGAATAAATACCTCA
CCAACAGTTAAACATGAGCAAAACACAATTTAGTAGGAGTAACCAACACTAAATTCTCTTTTCCTTTTTTACACATATACCCCTCGACGCTAACACTTAT
TACCACCATGTACCACCCCCTGGCCTTCAGCCTTGACGATCCTTCTTGGCGACGCGCACGCGCGCGCGCCACCCGCAAGAAACCTACCTCGTCGCCGTCG
ACGGAGCAGAGGAGGAAGAGGAAGAAGAAGAAGCAGAGCGCGTACGGTTCGGCGGCTAGACCTCGACGTGGCAGTAGGTGGCGGTCTGGAACCTGAGCCC
GCTGGCCCCCGGCGCGCCGTTGCCGCCGGCGCCGACGAGGAAGGCGGGGCAGGTCGCGAAGATGTGGTAGGGCGCGAAGGGGACGTTCGGGCCGGAGAGC
ACCGGCGACCACACCTCGACGTCGCCGTGGCCCTGGTACACCGGCGGGAGCGCGGAGGCCAGCGTGATCTGCTGGTACTTGTAGGAGGCGTA