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Detailed information on CNT30341811


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 7e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677272Eragrostis tefSetaria viridis4.0726.439060forward
CNT30295392Eragrostis tefTriticum aestivum8.6121.4586.61127forward
CNT30255788Eragrostis tefAvena sativa15.1946.8686.16224forward
CNT30663631Eragrostis tefTriticum dicoccoides13.9746.2986.41206forward
CNT30136525Eragrostis tefLolium perenne10.7827.2785.53159forward
CNT3017612Eragrostis tefZea mays7.5926.9986.61112forward
CNT30685285Eragrostis tefTriticum urartu42.4430.6981.31626forward
CNT30365453Eragrostis tefSorghum bicolor14.6481.5182.87216forward
CNT30578431Eragrostis tefOryza barthii22.1725.7785.32327forward
CNT30117133Eragrostis tefOryza nivara7.6635.8788.5113forward
CNT30592989Eragrostis tefEragrostis curvula13.3698.0191.37197reverse complement

Expression of CNT30341811

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHKQRQHTSPEQSKSAKQSTALLHYTSTWQ*

>peptide 2 (42 aa)
MSAMMPTMMARPKRRQSRRRHVSLMSSSPWLPQSLPLPMVTS*

>peptide 3 (33 aa)
TDRVDSLEISVRGIWLFFMIPNRYFIYIFKRCD*

>peptide 4 (63 aa)
MMRYPLATSLPSASARYGANGTLGPVSTGDQTSTSPWPWYTGGSDAPSVTCWYLYDAYTSRRS*

Sequence

>CNT30341811
ACTGACAGGGTGGATAGCTTAGAAATAAGTGTGAGGGGTATTTGGCTATTTTTTATGATTCCTAATAGATATTTTATATATATATTTAAGAGGTGTGATT
AATTTTTTTATAATCGTAGTGGTGGATAATTTTCTCATTTTCTATCGATTAATGTAGGAATTTTTAGGCCTTGTGAGAGAACATGGTGCGACCAAGCACA
AAAGCTGTAGTTTTTTGAAACTTATGGTCAAAAGTTGTAGTTCTCTGAAATATGTTACAATAGTTGTAGTTTTGTGCAATTTAATATAAAGAAAATAAAC
AATGTACCCTTAATTCTTGGGTTATTAACAATTGAACATGGAAGGATCTGAACAACGCTGCAAGACAAAATATATAGGGCTCCCAGGATGAATTAACCAC
TCTAAACAACCAGTCCTTTTACCTGTATACCCTCACTACTACCCATTATTATAATTTAGCACCCCATATCCCCTGTTTCGCTATGCACAAGCAGAGGCAG
CATACCTCACCAGAGCAGAGCAAAAGTGCGAAACAGAGCACGGCACTGCTACACTACACCTCGACGTGGCAGTAGGTGGCCGTCTGAAACTTTAGCCCGT
TGGCCCCTTGCACGCCGTTGCCACCGCTGGTGATGAAGTAGGCCGGGCATTTGACGAAGATGTGGTAGTGTCCGGAGGTCCAGGAGCCGACCTTCCACCG
TACGCGGCCGTCGATCTTGACCTCCATGATGAGGTACCCGTTGGCGACGTCCTTGCCGAGCGCGTCGGCGAGGTACGGCGCGAACGGGACGTTGGGCCCG
GTGAGCACGGGCGACCAGACGTCGACGTCGCCGTGGCCCTGGTACACCGGCGGCAGCGACGCGCCCAGCGTCACCTGCTGGTACTTGTACGACGCGTACA
CGTCGAGGCGGTCGTAGTGGACGCCCACGCGGCTGTTGGGGTTGCGTGAGGCGATGGTCACCTGGAGCGCCGTGGAGAGGACGCCGGAGACGTTGGCGAG
GTCGAGCTGCTTGAGCGTGGCGTCCTGGAGGTAGAAGCGCGGGTGCGTGGGGCGGAGCACAAGGTAGACGATGAGCGCGATGATGCCGACGATGATGGCC
AGGCCGAAGAGGAGGCAAAGCAGGCGACGGCACGTGTCCTTGATGTCGTCGTCGCCGTGGTTGCCGCAGTCCTTGCCCTTGCCCATGGTGACCAGCTAGC
AGAGCGTTCCTGGAGCTGGTTCACTGGCTGGTTGGGTTTGGGTTTCTCTGCTCGCTTGCTTGCTGAGTTGGTTCTCTCTCTGTGTGGGTGGGTTGTTGGA
AGCTTTGGGGTTGGAGGAGGCTTATGAGCTGGGCGTGTTGTCCTTGAGGGATTCAGTAGTGGTAGGAGTAGGAGTAGATTTTATTATTGGTCACTGATTT
TTAAATGATCATGTTGAAATCATGGAGGGTGAAAGAAAGCTCCGTGTCGACGGCTTTCCGTTTGCCCGGAATGCG