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Detailed information on CNT30641718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677454Nymphaea colorataSetaria viridis45.2988.1393.47245forward
CNT30195089Nymphaea colorataPisum sativum38.8212.0897.62210reverse complement
CNT30220355Nymphaea colorataHordeum vulgare34.9463.2197.88189forward
CNT30442196Nymphaea colorataAegilops tauschii74.6847.6490.84404reverse complement
CNT30660220Nymphaea colorataTriticum dicoccoides51.0281.4293.12276reverse complement
CNT303548Nymphaea colorataZea mays79.4830.290.7430reverse complement
CNT30215429Nymphaea colorataHelianthus annuus70.2453.9897.37380forward
CNT30720843Nymphaea colorataTriticum spelta41.96105.5884.58227forward
CNT30642274Nymphaea colorataCannabis sativa7851.6590.76422reverse complement
CNT30331560Nymphaea colorataDioscorea rotundata59.5263.7692.55322reverse complement
CNT30604015Nymphaea colorataOryza punctata34.7538.9294.15188reverse complement
CNT30174498Nymphaea colorataVigna angularis73.3878.6193.95397forward
CNT30551087Nymphaea colorataOryza brachyantha39.9372.4892.13216reverse complement
CNT30602362Nymphaea colorataGaldieria sulphuraria14.9729.7883.9581reverse complement

Expression of CNT30641718

Peptides detected in this lncRNA

>peptide 1 (84 aa)
ESTHLGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWVAKCGADNC*

>peptide 2 (30 aa)
EHSSWVGLLLRCFQQLSAPHLATQRLPWAR*

>peptide 3 (36 aa)
MLSAVIRSALGYPAFTVGTITGTPEFGPYPVWALEH*

Sequence

>CNT30641718
GAGAGCACTCATCTTGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGT
ACACCAGAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAG
TTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTAT
TCCTACTTCCCCAGAGCCTCTGGTAGCACAGTTGAGACAGCGACGGGTTCTCTGTCCCTGCTGGGATGGAGCGACAGAAGTATTGAGAATCCAAGATAAG
GTCACGGCGAGACGAGCCGTTTATCATCACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGAGAGATTTGAACC
TTGTTCCTACATGACCCGATCAATTCGATCAGGCACTCGCC